| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 215622 | 56 (0.760) | 191 (5.950) +TTTAATATCAGTAAACCGGACATAACC |
41/42 | NT | 87.5% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | Exported | 2705182 = | 69 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 527 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > Exported/2705113‑2705252 | gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:3368649‑M2/67‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:4982646‑M2/64‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:2861141‑M2/64‑70 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:4132693‑M2/11‑1 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:50209‑M2/61‑70 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:2229110‑M2/59‑70 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:2880769‑M2/59‑68 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:4387347‑M2/59‑71 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggactaaccCATGAAGAAAAATc < 1:3740027‑M2/14‑1 (MQ=255) aaaggcggaagttgcctcaggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:2698574‑M2/14‑1 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc > 1:3958171‑M2/57‑70 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaaga < 1:1560047‑M2/8‑1 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:3470264‑M2/56‑71 (MQ=255) ggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgcg < 1:1469694‑M2/17‑1 (MQ=255) gcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCgcgc > 1:1228462‑M2/54‑71 (MQ=255) gcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCgcgc > 1:117884‑M2/54‑71 (MQ=255) cggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCt > 1:1739002‑M2/53‑71 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:332257‑M2/20‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:4470257‑M2/50‑71 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:4255757‑M2/49‑71 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:4929247‑M2/11‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:4734431‑M2/24‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3528212‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:432408‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:4799284‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1635409‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1116668‑M2/12‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1138882‑M2/46‑70 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:2945551‑M2/46‑70 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2598626‑M2/25‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:2009945‑M2/26‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:62798‑M2/27‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3656472‑M2/26‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1329207‑M2/26‑1 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:1598094‑M2/41‑52 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:743184‑M2/41‑52 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:1976165‑M2/11‑1 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3271257‑M2/25‑1 (MQ=255) tttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtt < 1:3885147/58‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2528930‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:2496010‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:4172558‑M2/34‑1 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1428419/70‑1 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:1005571‑M2/11‑1 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3992937‑M2/32‑1 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:2276459‑M2/35‑1 (MQ=255) agcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg < 1:4213606‑M2/37‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:3827568/1‑70 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:932233‑M2/40‑1 (MQ=255) acaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2984563/71‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc > 1:2442264‑M2/31‑70 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:2923820‑M2/29‑65 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:1618779‑M2/43‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:3491423‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:5071581‑M2/29‑71 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttt < 1:1877863‑M2/21‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2349281‑M2/28‑70 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:1515382‑M2/44‑1 (MQ=255) ccGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:1283447/39‑1 (MQ=255) ccGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:2793180/39‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:3201109‑M2/44‑1 (MQ=255) tatcagtaaaccggacataaccCATGAAGAAGAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:4755791‑M2/48‑1 (MQ=255) tcagtaaaccggacataaccCTTGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:3646759‑M2/21‑71 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:3400678‑M2/42‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt < 1:591033‑M2/51‑1 (MQ=255) cagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt > 1:663845‑M2/20‑48 (MQ=255) cagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:5197810‑M2/20‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:1953797‑M2/19‑52 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:560626‑M2/19‑52 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:4855605/42‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:4693809‑M2/32‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:687659‑M2/33‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:1697641‑M2/33‑1 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:3158024/1‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:2172649‑M2/15‑41 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:5107468‑M2/15‑41 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:2751399‑M2/15‑41 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:400510‑M2/15‑66 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:3592659‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:4610415‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTATGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:3716987‑M2/15‑66 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCtttt < 1:1049956‑M2/22‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:3081945‑M2/58‑1 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:3937732‑M2/13‑70 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:4085803‑M2/13‑70 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:1827001‑M2/60‑1 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:2710252‑M2/60‑1 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:1082979‑M2/60‑1 (MQ=255) tagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:20651/1‑43 (MQ=255) tagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGatat > 1:849084/1‑70 (MQ=255) cataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:4566948‑M2/8‑45 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAtt > 1:2650241‑M2/7‑70 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAtt > 1:2108165‑M2/7‑70 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:4408118‑M2/65‑1 (MQ=255) tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:3774639/51‑1 (MQ=255) tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:4517043/51‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:5039476‑M2/5‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:5173803‑M2/4‑70 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:888862‑M2/4‑70 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:4040865‑M2/48‑1 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > Exported/2705113‑2705252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |