| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 316843 | 46 (0.920) | 4 (0.090) | 3/90 | NT | 8.5% | intergenic (‑483/+107) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein |
| ? | AP009048 | = 316852 | 46 (1.040) | intergenic (‑492/+98) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein | |||||
CTGTAAAAATACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/316772‑316843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtgaAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAATCATG < AP009048/316852‑316783 CTGTAAAAATACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGT < 1:1679246/70‑1 GTAAAAATACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGA > 1:1850844/1‑70 ATACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGT < 1:4604016/62‑1 TACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGAAGATCAA > 1:1069990/1‑70 CATGATTAATATCAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGA > 1:2276940/1‑57 GATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGAAGATCAATATCACTCC < 1:1350921/70‑1 TAAGACGACAAAAACCTTTTAACAGGGAGTGAAGATCAAT < 1:4435534/40‑1 TAAGACGACAAAAACCTTTTAACAGGGAGTGAAGATCAAT < 1:984122/40‑1 GAGTGAAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAA < 1:1597463/71‑1 AGTGAAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAAT > 1:1450685/1‑71 GTGAAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAAT > 1:3953405/1‑70 TGAAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAA < 1:1927611/49‑1 TGAAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAA < 1:3958851/49‑1 AAGATCAATATTACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAATCATG > 1:16150/1‑71 CTGTAAAAATACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/316772‑316843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtgaAGATCAATATCACTCCCTGTTAAAAGGTTTTTGTCGTCTTAGGTAAAATACATGATTAATATCAATCATG < AP009048/316852‑316783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |