| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 316843 | 46 (0.920) | 4 (0.090) | 3/90 | NT | 8.5% | intergenic (‑483/+107) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein |
| ? | AP009048 | = 316852 | 46 (1.040) | intergenic (‑492/+98) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein | |||||
ACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACGCCTG > AP009048/316782‑316918 | aCATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCt > 1:1933482/1‑71 (MQ=255) cATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTAATATTGATCTt > 1:16150‑M2/1‑70 (MQ=255) attgatATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTtcact > 1:1450685‑M2/1‑66 (MQ=255) attgatATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTtcac > 1:3953405‑M2/1‑66 (MQ=255) ttgatATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTtcactc < 1:1597463‑M2/71‑7 (MQ=255) tAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCata > 1:2691919/1‑71 (MQ=255) tAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCata > 1:4284794/1‑71 (MQ=255) aaTCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCata > 1:2958706/1‑70 (MQ=255) aTCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCActct < 1:53234/63‑1 (MQ=255) cATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGt > 1:1434810/1‑63 (MQ=255) ttttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTaa > 1:2034404/1‑71 (MQ=255) tttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATAtctc > 1:3208095/1‑64 (MQ=255) ttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTtca < 1:3958851‑M2/49‑4 (MQ=255) ttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTtca < 1:1927611‑M2/49‑4 (MQ=255) ttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTaa > 1:3933862/1‑69 (MQ=255) ttACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAata > 1:4510781/1‑71 (MQ=255) ccTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATg < 1:3793760/70‑1 (MQ=255) cTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGc < 1:2490306/71‑1 (MQ=255) aaGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGt > 1:2378791/1‑71 (MQ=255) aGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGt > 1:3301217/1‑70 (MQ=255) aGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTc < 1:2975098/71‑1 (MQ=255) gacgacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTaa < 1:4301977/61‑1 (MQ=255) acgacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAg < 1:2324928/71‑1 (MQ=255) cgacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATgg > 1:2600951/1‑64 (MQ=255) cgacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAgg > 1:1725350/1‑71 (MQ=255) cgacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAgg < 1:1377262/71‑1 (MQ=255) gacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGt < 1:181499/44‑1 (MQ=255) gacAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCCGTAATATGGCGTCAGGc < 1:3145724/71‑1 (MQ=255) cAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTaa > 1:4286809/1‑56 (MQ=255) aaaaaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCtt > 1:4040777/1‑70 (MQ=255) aaaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGt > 1:1006811/1‑39 (MQ=255) aaaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGt > 1:3425904/1‑39 (MQ=255) aaaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcat > 1:1828372/1‑71 (MQ=255) aaaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcat > 1:3045269/1‑71 (MQ=255) aaCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTc > 1:3134480/1‑61 (MQ=255) aCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatca < 1:2609851/71‑1 (MQ=255) aCCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatc > 1:1946398/1‑70 (MQ=255) aCCTTGTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatca > 1:4519801/1‑71 (MQ=255) ccTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCa > 1:1169158/1‑60 (MQ=255) ccTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatcat < 1:2169055/71‑1 (MQ=255) cTTTAAACAGGGAGAGATATTTATCTTCACTCTGTCa > 1:152941/1‑37 (MQ=25) ttttAACAGGGAGTGATATTGATCTTCACTCTGTCATAtc < 1:3034061/40‑1 (MQ=255) tttAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCa > 1:2324601/1‑57 (MQ=255) ttAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAg > 1:4352958/1‑70 (MQ=255) aaCAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGaa < 1:1259139/70‑1 (MQ=255) aCAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGaaa < 1:3577682/70‑1 (MQ=255) aCAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAg < 1:733765/71‑1 (MQ=255) cAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAgg < 1:3120193/71‑1 (MQ=255) aGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCa > 1:970457/1‑51 (MQ=255) aGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCa > 1:3385470/1‑51 (MQ=255) ggAGTGATATTGATCTtcactccctgttaaaaggtttttgtcgtcttaggtaaaatacatgattaatatc < 1:1350921‑M2/70‑55 (MQ=255) gAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGc < 1:1920532/71‑1 (MQ=255) gTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCt < 1:3511001/71‑1 (MQ=255) tGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGa < 1:2451888/60‑1 (MQ=255) tGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTg < 1:2690453/71‑1 (MQ=255) tGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTg < 1:4278495/71‑1 (MQ=255) atatTGATCTTCACTCTGTCATATCTCCGGTAata > 1:4195289/1‑35 (MQ=255) tatTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAg > 1:1865096/1‑43 (MQ=255) tatTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACg > 1:2719573/1‑71 (MQ=255) atTGATCTtcactccctgttaaaaggtttttgtcgtctta < 1:984122‑M2/40‑33 (MQ=255) atTGATCTtcactccctgttaaaaggtttttgtcgtctta < 1:4435534‑M2/40‑33 (MQ=255) ttGATCTtcactccctgttaaaaggtttttgtcgtcttaggtaaaatacatgattaatatcaatcatgta > 1:1069990‑M2/1‑7 (MQ=255) ttGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGaa > 1:1876617/1‑56 (MQ=255) gATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatcatca > 1:4543482/1‑51 (MQ=255) gATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTtcatc > 1:1923838/1‑47 (MQ=255) gATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACGCCt > 1:2954334/1‑70 (MQ=255) aTCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGaaa > 1:295785/1‑54 (MQ=255) tCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACGc < 1:4187075/66‑1 (MQ=255) tCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACGCCTg < 1:2364738/69‑1 (MQ=255) | ACATGATTGATATTAATCATGTATTTTACCTAAGACGACAAAAACCTTTTAACAGGGAGTGATATTGATCTTCACTCTGTCATATCTCCGGTAATATGGCGTCAGGCTTCATCATCAGAAAGGGGGCCTGACGCCTG > AP009048/316782‑316918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |