New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	324679 =	38 (0.760)	4 (0.080)	4/98	NT	10.3%	intergenic (‑91/+122)	ykgH/betA	predicted inner membrane protein/choline dehydrogenase, a flavoprotein
	?	AP009048	324704 =	33 (0.690)					intergenic (‑116/+97)	ykgH/betA	predicted inner membrane protein/choline dehydrogenase, a flavoprotein

TGCTTCATATCCAGTATTCATGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/324704‑324679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTC  >  AP009048/324704‑324764                                                                                         TGCTTCATATCCAGTATTCATGATGCATGAGAGTTACCTCAGTGTTTATATAAGGA                                 <  1:238790/56‑1  GCTTCATATCCAGTATTCATGATGCATGAGAGTTACCTCAGTGT                                            <  1:1032578/44‑1    TTCATATCCAGTATTCATGATGCATGAGAGTTACCTCAGTGTTT                                          >  1:3795259/1‑44                 TTCATGATGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTC  <  1:512395/71‑1                                                                                         TGCTTCATATCCAGTATTCATGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/324704‑324679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTC  >  AP009048/324704‑324764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.