| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 324679 = | 38 (0.760) | 4 (0.080) | 4/98 | NT | 10.3% | intergenic (‑91/+122) | ykgH/betA | predicted inner membrane protein/choline dehydrogenase, a flavoprotein |
| ? | AP009048 | 324704 = | 33 (0.690) | intergenic (‑116/+97) | ykgH/betA | predicted inner membrane protein/choline dehydrogenase, a flavoprotein | |||||
TATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAA > AP009048/324641‑324766 | tATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATgaga < 1:3807017/69‑1 (MQ=255)tATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATgag < 1:3922983/68‑1 (MQ=255)tATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGt < 1:2053692/71‑1 (MQ=255) tCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTa < 1:2315605/71‑1 (MQ=255) gAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATgag < 1:1748388/62‑1 (MQ=255) tccttatataaacactgaggtaactctcatGCATCATGAATACTGGATATGAAGCa < 1:238790‑M1/26‑1 (MQ=255) tGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGagag < 1:1117901/61‑1 (MQ=255) tGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAgt < 1:727612/71‑1 (MQ=255) ggTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTtat < 1:3151581/71‑1 (MQ=255) gTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTtata > 1:2292655/1‑71 (MQ=255) aaaTATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCa > 1:71598/1‑45 (MQ=255) aaaTATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTta > 1:2299803/1‑66 (MQ=255) tatCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGa < 1:1185229/71‑1 (MQ=255) tCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCAt < 1:3867499/41‑1 (MQ=255) tCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGAtt > 1:2464940/1‑71 (MQ=255) tCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGAt > 1:129440/1‑70 (MQ=255) aGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTc < 1:3606034/70‑1 (MQ=255) gCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTta < 1:2775716/58‑1 (MQ=255) gCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCgg < 1:4085235/71‑1 (MQ=255) cAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGagag > 1:1255203/1‑42 (MQ=255) cAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCa < 1:4070396/50‑1 (MQ=255) aaaaaGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTc > 1:733453/1‑71 (MQ=255) aaGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTcccc > 1:123183/1‑71 (MQ=255) gCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATaa > 1:3702494/1‑56 (MQ=255) gCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCct > 1:901359/1‑71 (MQ=255) tgcttcatatccagtattcatgatgcATGAGAGTTACCTCAGTGTTTATATAAGGa < 1:238790‑M2/30‑1 (MQ=255) cGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTtatat < 1:3842324/51‑1 (MQ=255) gcttcatatccagtattcatgatgcATGAGAGTTACCTCAgtgt < 1:1032578‑M2/19‑1 (MQ=255) ttcatatccagtattcatgatgcATGAGAGTTACCTCAGTGttt > 1:3795259‑M2/24‑44 (MQ=255) atcatGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGttt < 1:1649967/44‑1 (MQ=255) catGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGaa > 1:915080/1‑71 (MQ=255) atGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTcc > 1:1913538/1‑58 (MQ=255) gAATACTGGATATGAAGCATGAGAGTTACCTCAgt < 1:3709941/35‑1 (MQ=255) aaTACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACgg > 1:1982422/1‑70 (MQ=255) tACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTaa > 1:3449373/1‑71 (MQ=255) aCTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAAc > 1:638476/1‑71 (MQ=255) ttcatgatgcATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACtctc < 1:512395‑M2/61‑1 (MQ=255) gATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAActct > 1:2327563/1‑70 (MQ=255) atatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCa < 1:1843279/71‑1 (MQ=255) tatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTg > 1:2942240/1‑55 (MQ=255) tatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCaa > 1:3915382/1‑71 (MQ=255) tatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCa < 1:1756274/70‑1 (MQ=255) gAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCgg < 1:836411/40‑1 (MQ=255) aTGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCct > 1:3126805/1‑42 (MQ=255) | TATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAA > AP009048/324641‑324766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |