New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 115317227 (0.540)3 (0.060) 3/98 NT 9.2% intergenic (+191/‑20) fabG/acpP 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein
?AP009048 = 1153204 33 (0.690)coding (13/237 nt) acpP acyl carrier protein

GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1153110‑1153172
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  <  AP009048/1153204‑1153156
                                                                                                                
GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTT                                                    <  1:1543513/62‑1
                        CATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCA                   <  1:3675644/71‑1
                         ATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCAA                  <  1:2564371/71‑1
                                                    AAAGCGAGTTTCGATAGTGCTCATACTCTTAAATTTCCTATCAAAA                >  1:3912836/1‑46
                                                             TTCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTC       <  1:1162776/46‑1
                                                              TCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  >  1:1191296/1‑50
                                                                                                                
GGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1153110‑1153172
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttCGATAGTGCTCATACTCTTAAATTTCCTATCAAAACTCGCTTTCGCGAT  <  AP009048/1153204‑1153156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.