| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2722868 | 34 (0.680) | 3 (0.070) | 3/88 | NT | 8.7% | coding (34/273 nt) | yfiM | hypothetical protein |
| ? | AP009048 | = 2722875 | 34 (0.790) | coding (41/273 nt) | yfiM | hypothetical protein | |||||
CTTTTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2722793‑2722868‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataaagTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATATGGCTGCATCCAGAAAGTAACAA < AP009048/2722875‑2722811 CTTTTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGG < 1:299583/70‑1CTTTTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCAATATGGCTAACGATAGCTGGAGCGGGCAGGA > 1:2867767/1‑71 TTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATA < 1:491657/70‑1 TTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGA < 1:1753240/68‑1 ttcTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAA < 1:1892156/67‑1 TGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAA < 1:3548560/70‑1 TTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAA < 1:4588122/63‑1 TTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCACGATAAAGTGTTGAGCTTTATCCT < 1:973095/71‑1 GCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGAT < 1:2080322/38‑1 AGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGTGTTGAGCTTT < 1:2263358/51‑1 TATTGCTAACGATAGCTGGAGCGGGCAGGATAAAG < 1:1280261/35‑1 ATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGTGTTGAGCTT > 1:47425/1‑44 gaGATAAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCA < 1:845488/47‑1 ATAAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATATGGCTGCATCCAGAAAGTAACAA < 1:3601880/71‑1 ATAAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATACGGCTGCAT < 1:625625/57‑1 ATAAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCA < 1:4030814/46‑1 TAAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATATGGCTGCATCCAGAAAGTAACAA > 1:3541473/1‑70 AAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATATGGC > 1:2430667/1‑50 AAAGTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCAT < 1:1247471/45‑1 CTTTTTGTCTGTTCGCTATTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2722793‑2722868‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataaagTGTTGAGCTTTATCCTGCCCGCTCCAGCTATCGTTAGCCATATGGCTGCATCCAGAAAGTAACAA < AP009048/2722875‑2722811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |