| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2722868 | 34 (0.680) | 3 (0.070) | 3/88 | NT | 8.7% | coding (34/273 nt) | yfiM | hypothetical protein |
| ? | AP009048 | = 2722875 | 34 (0.790) | coding (41/273 nt) | yfiM | hypothetical protein | |||||
TTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCGGGAT > AP009048/2722811‑2722945 | ttGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActttat < 1:3601880‑M2/71‑7 (MQ=255)ttGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActtta > 1:3541473‑M2/1‑65 (MQ=255) ttACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGc < 1:3290982/71‑1 (MQ=255) cTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCt < 1:1238272/70‑1 (MQ=255) tCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGc > 1:1384218/1‑71 (MQ=255) gATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGa < 1:2864007/69‑1 (MQ=255) aTGCAGCCGTATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActttat < 1:625625‑M2/57‑7 (MQ=255) tGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCt < 1:1744319/71‑1 (MQ=255) tGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCt < 1:4340571/71‑1 (MQ=255) tGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCt < 1:3079963/71‑1 (MQ=255) tGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCt < 1:3582230/71‑1 (MQ=255) tGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCt < 1:3848290/71‑1 (MQ=255) cAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCttt < 1:4067262/71‑1 (MQ=255) cAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCttt < 1:1437656/71‑1 (MQ=255) aGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTc > 1:279872/1‑71 (MQ=255) gCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActtt > 1:2430667‑M2/1‑46 (MQ=255) tatGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGc < 1:2414837/51‑1 (MQ=255) tatGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTccgccg < 1:648228/71‑1 (MQ=255) atGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActtt < 1:1247471‑M2/45‑5 (MQ=255) tGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActttatctc < 1:845488‑M2/49‑10 (MQ=255) tGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACActttat < 1:4030814‑M2/46‑7 (MQ=255) tGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCt > 1:4545240/1‑51 (MQ=255) gCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTccgccgccg > 1:121719/1‑70 (MQ=255) cTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGAt > 1:132107/1‑55 (MQ=255) cTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGa < 1:8349/71‑1 (MQ=255) tAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCtt < 1:1400287/58‑1 (MQ=255) cGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAAt > 1:2567899/1‑70 (MQ=255) cGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATg < 1:535826/71‑1 (MQ=255) aTAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGaa < 1:2132045/71‑1 (MQ=255) gCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAata > 1:3595745/1‑70 (MQ=255) cTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGGCGCCGGAAATGAATAtt < 1:821754/71‑1 (MQ=255) cTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATAtt < 1:1141048/71‑1 (MQ=255) ggAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGACGGaa > 1:1685592/1‑60 (MQ=255) ggCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCa < 1:357209/70‑1 (MQ=255) gCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCAt > 1:3997631/1‑70 (MQ=255) aGGATAAAGCTCAACActttatcgtgcccgctccagctatcgttagccatatggctgcatccagaaagtaa < 1:973095‑M2/71‑56 (MQ=255) aGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAatat > 1:403828/1‑59 (MQ=255) gATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAggg > 1:981202/1‑71 (MQ=255) aTAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAgggg < 1:1630385/71‑1 (MQ=255) tAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAAt < 1:4302067/49‑1 (MQ=255) tAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGa > 1:3458025/1‑71 (MQ=255) aaaGCTCAACActttatcctgcccgctccagctatcgttagccatatggct < 1:2263358‑M2/51‑41 (MQ=255) aaaGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGAt > 1:3894938/1‑71 (MQ=255) aaGCTCAACActttatcctgcccgctccagctatcgttagccat > 1:47425‑M2/1‑10 (MQ=255) aaGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGAt < 1:4486394/70‑1 (MQ=255) aGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGa < 1:4300440/71‑1 (MQ=255) gCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGaa < 1:1000325/43‑1 (MQ=255) gCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGaa < 1:479743/43‑1 (MQ=255) aaCACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCgg < 1:4522386/71‑1 (MQ=255) acacTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGaa < 1:1698734/38‑1 (MQ=255) acacTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGc < 1:756823/67‑1 (MQ=255) acacTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCggg < 1:2387595/71‑1 (MQ=255) acacTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCg > 1:1281278/1‑69 (MQ=255) cacTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCGGGa > 1:3997826/1‑71 (MQ=255) acTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCGGGAt < 1:1583536/71‑1 (MQ=255) | TTGTTACTTTCTGGATGCAGCCATATGGCTAACGATAGCTGGAGCGGGCAGGATAAAGCTCAACACTTTATCGCCTCGGCGATGCTTTCCGCCGCCGGAAATGAATATTCACAGCATCAGGGGATGAGCCGGGAT > AP009048/2722811‑2722945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |