| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 71265 | 53 (1.060) | 33 (0.910) +AGGGTCCCTAAGTC |
19/74 | NT | 53.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 27 (0.540) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 135 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > AP009048/71195‑71335 | gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:3602746/71‑1 (MQ=255) ggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:3892948/71‑1 (MQ=255) ccAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTg < 1:43006/71‑1 (MQ=255) ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:4577005‑M1/71‑4 (MQ=255) cAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:1055326/1‑71 (MQ=255) cAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:2700420/1‑71 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:3601592‑M1/1‑66 (MQ=255) cccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:3972539/64‑1 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:1189812/1‑70 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACg < 1:3387115/71‑1 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:3476460‑M1/1‑62 (MQ=255) cgagcgacTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:409047/1‑70 (MQ=255) gagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:1549478/66‑1 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGaa < 1:1545164/71‑1 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:1646799‑M1/1‑59 (MQ=255) cgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:1621110‑M1/1‑58 (MQ=255) gTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa > 1:2144731/1‑71 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:2800835‑M1/68‑18 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:1233892‑M1/4‑54 (MQ=255) tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:4095204/1‑71 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa < 1:420242‑M1/69‑19 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:2364991‑M1/54‑4 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:964339‑M1/52‑3 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:199141‑M1/71‑23 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:4221980/1‑48 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt > 1:215724/1‑53 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:1404123‑M1/1‑45 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:1677945/1‑71 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:1119104/1‑62 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCt > 1:2330953/1‑71 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagtgtccctaagtctaaaacgaaaggcc < 1:1050338‑M1/70‑29 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTg < 1:2680793/63‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTACCCGTCAAGTTGTCATAAagggtcccta < 1:3034832‑M1/51‑11 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggccca < 1:3872458‑M1/70‑31 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTg > 1:2962807/1‑43 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:806176/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagtgtccctaagtctaaaacgaaaggcccagtc > 1:664362‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:226034/1‑71 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:4222906‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct > 1:1266235‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:3890504‑M1/38‑2 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:4047799/1‑70 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:1064407‑M1/71‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:908598‑M1/41‑6 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:1672130/65‑1 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:4346805/1‑69 (MQ=255) aaacaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:1845040/64‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg < 1:2294761‑M1/39‑5 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:3643658/1‑46 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:3795273/1‑69 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:780864/1‑69 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTa < 1:1775543/71‑1 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:568212‑M1/1‑31 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:229182‑M1/1‑31 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:3520187‑M1/1‑31 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTGATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact < 1:1623859‑M1/71‑42 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:3851563‑M1/1‑30 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa < 1:3394875/71‑1 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa < 1:3405865/71‑1 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:2863092‑M1/65‑38 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:4454398‑M1/1‑25 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAggg > 1:3446653/1‑71 (MQ=255) gTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttc > 1:1863576‑M1/1‑21 (MQ=255) gTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaagg < 1:2066495‑M1/47‑27 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGa > 1:3995948/1‑43 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg < 1:4382531/70‑1 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGc < 1:1838123/71‑1 (MQ=255) aGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgt > 1:24335‑M1/1‑19 (MQ=255) aGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact < 1:1424631‑M1/60‑42 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:2571424/71‑1 (MQ=255) gTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAAt < 1:1425523/71‑1 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:1130500‑M1/52‑39 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:1442747‑M1/49‑36 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc < 1:1178790‑M1/42‑29 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc < 1:4513055/71‑1 (MQ=255) cAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcg > 1:4031735‑M1/1‑13 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGa > 1:1866780/1‑44 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc > 1:2584616/1‑71 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatt > 1:4030108‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactg > 1:749441‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaa > 1:3414585‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtacctaagtctaaaacgaa > 1:3633128‑M1/1‑12 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACgg > 1:2192083/1‑38 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:3647734/1‑71 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:2630510/1‑71 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:3596838/1‑71 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttta < 1:77402‑M1/66‑57 (MQ=255) ttGTCATAATTGGTAACGAATCAGACAATCGACGGCTTGACg < 1:1570871/42‑1 (MQ=255) tGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCt > 1:3840132/1‑71 (MQ=255) gTCATAAagggtccctaagtctaaaacgaaaggccca < 1:2231218‑M1/37‑31 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAgg > 1:1647770/1‑52 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc > 1:2526608/1‑64 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:397851‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:1808321‑M1/44‑39 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCg > 1:1769976/1‑71 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCg > 1:1362834/1‑71 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttcgactg < 1:3378876‑M1/45‑43 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg < 1:1119677/53‑1 (MQ=255) aaTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGttt > 1:3008546/1‑51 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa > 1:2837586/1‑71 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > AP009048/71195‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |