| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 71265 | 53 (1.060) | 33 (0.910) +AGGGTCCCTAAGTC |
19/74 | NT | 53.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 27 (0.540) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > AP009048/3464811‑3464948 | ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:2800835‑M2/3‑1 (MQ=255)ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:1233892‑M2/69‑70 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa < 1:420242‑M2/4‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:199141‑M2/8‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa > 1:291467‑M2/58‑61 (MQ=255) ttgtgaagaaaaagtgaatgatgtacccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg < 1:1094915‑M2/12‑1 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagtgtccctaagtcTAAAACGAAAGGcc < 1:1050338‑M2/14‑1 (MQ=255) tgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa < 1:3872458‑M2/16‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagtgtccctaagtcTAAAACGAAAGGCCCAGTc > 1:664362‑M2/53‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:4222906‑M2/52‑71 (MQ=255) gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:1064407‑M2/21‑1 (MQ=255) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:126670/1‑71 (MQ=34) gcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 1:4577313/69‑1 (MQ=35) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:229182‑M2/46‑59 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:568212‑M2/46‑71 (MQ=255) gtgaatgatgtagccgtcaagttgtgataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt < 1:1623859‑M2/27‑1 (MQ=255) gtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:3851563‑M2/45‑49 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:2863092‑M2/23‑1 (MQ=255) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:2025632/1‑63 (MQ=31) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1987741/71‑1 (MQ=34) tttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:2067294/1‑71 (MQ=34) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaaa > 1:4438245‑M2/41‑50 (MQ=255) ttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:1571482/1‑71 (MQ=34) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:4454398‑M2/40‑65 (MQ=255) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:3534983/70‑1 (MQ=35) gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:2334673/69‑1 (MQ=35) tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg > 1:1878688/1‑60 (MQ=35) tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:657316/69‑1 (MQ=35) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg < 1:2066495‑M2/12‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:1863576‑M2/36‑71 (MQ=255) tACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 1:2279062/60‑1 (MQ=35) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt < 1:1615349‑M2/27‑1 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACt < 1:1424631‑M2/27‑1 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:24335‑M2/34‑71 (MQ=255) aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:1109214/1‑71 (MQ=34) aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:859754/1‑71 (MQ=34) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:4183881/71‑1 (MQ=34) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:1178790‑M2/14‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:1442747‑M2/21‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:2310829‑M2/24‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:1130500‑M2/24‑1 (MQ=255) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:1365047/69‑1 (MQ=35) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:1639130/71‑1 (MQ=34) caagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:4031735‑M2/28‑64 (MQ=255) gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:3930961/71‑1 (MQ=34) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:3414585‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg > 1:749441‑M2/27‑54 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt > 1:4030108‑M2/27‑70 (MQ=255) aagttgtcataaagggtacctaagtcTAAAACGaa > 1:3633128‑M2/27‑35 (MQ=255) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:77402‑M2/42‑1 (MQ=255) gagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:4155451/1‑55 (MQ=35) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:2279512‑M2/23‑69 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCa < 1:2231218‑M2/16‑1 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg > 1:2041372‑M2/22‑68 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:1808321‑M2/24‑1 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:397851‑M2/50‑4 (MQ=255) gTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGcc < 1:2855229/71‑1 (MQ=34) taaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:3378876‑M2/28‑1 (MQ=255) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1062977/37‑1 (MQ=37) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:2234868/59‑1 (MQ=35) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:353419/36‑1 (MQ=37) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGt > 1:1191683/1‑71 (MQ=34) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGtt > 1:1751265/1‑71 (MQ=34) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtttt < 1:4088059‑M2/41‑1 (MQ=255) caacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTa > 1:1106510/1‑71 (MQ=34) aacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:855221/1‑37 (MQ=40) aacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:892299/1‑42 (MQ=38) aagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:2411216‑M2/6‑36 (MQ=255) aagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:4118272‑M2/6‑36 (MQ=255) aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt < 1:903804/41‑1 (MQ=38) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCg < 1:2868768/70‑1 (MQ=35) | CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > AP009048/3464811‑3464948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |