| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2412225 | NA (NA) | 67 (1.340) | 46/102 | NT | 94.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 4 (0.080) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > AP009048/2412157‑2412295 | gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa > 1:3318297/1‑70 (MQ=31)gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa > 1:120902/1‑70 (MQ=31) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:967939/71‑1 (MQ=35) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:3226064/71‑1 (MQ=35) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:2553359/71‑1 (MQ=35) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa > 1:4131071/1‑70 (MQ=35) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:2160920/71‑1 (MQ=38) cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:1351067/1‑69 (MQ=37) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:4546398/1‑71 (MQ=40) aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:2582659/1‑71 (MQ=40) gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:1235699/1‑71 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa > 1:1697745/1‑61 (MQ=40) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:4614703/71‑1 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:4572698/71‑1 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg > 1:4092463/1‑71 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:575140/63‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTg < 1:4288074/70‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTATGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2051318/63‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:4328832/50‑1 (MQ=38) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:1989831/49‑1 (MQ=38) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaa < 1:566421/47‑1 (MQ=35) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:805548/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:3534906/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:1990164/1‑54 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:3250901/1‑54 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:2361355/56‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt > 1:424325/1‑65 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:4613782/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa < 1:1949691/44‑1 (MQ=32) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAATCGACTCACATTGTTCCGTtat < 1:3912179/71‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:2455077/51‑1 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:834867/51‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcac > 1:4146792/1‑57 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:514842/71‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:2626150/1‑61 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:962637/1‑61 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:1608943/1‑38 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa > 1:1061597/1‑39 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa > 1:1297866/1‑39 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCaaaa > 1:3826172/1‑36 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:2637812/1‑39 (MQ=255) atACACTAAATCAGTAAGTGGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:2119734/71‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:4174963/1‑56 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:4102335/1‑55 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1562592/1‑68 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa < 1:1244467/70‑1 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAg < 1:1079276/71‑1 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa < 1:2627365/38‑1 (MQ=255) cTAATTCTGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa < 1:3527786/70‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 1:3621977/71‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTACGTTATAATGCCTGAAGTAGAt < 1:1169133/71‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:1275805/1‑70 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:4499220/1‑70 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca > 1:325290/1‑71 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:4401365/60‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:1074223/70‑1 (MQ=255) cAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAg > 1:4493068/1‑70 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:1576075/1‑70 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAat < 1:605971/69‑1 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:4257656/47‑1 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGATGTAGATCACAGAATATATCt > 1:3233996/1‑70 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTc < 1:3668652/71‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata < 1:695793/63‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata < 1:1132141/63‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata < 1:294499/62‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg < 1:2870705/71‑1 (MQ=255) caTCACCAAAAAAGCGACTCTCATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:1583667/1‑70 (MQ=255) caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAgg > 1:3127927/1‑70 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:1563260/54‑1 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc < 1:1085680/71‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa > 1:4239673/1‑71 (MQ=255) | GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > AP009048/2412157‑2412295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |