| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 713380 = | 34 (0.680) | 52 (1.130) | 37/94 | NT | 63.3% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | AP009048 | = 4125338 | 29 (0.630) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 102 total aligned reads displayed.
GCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCC > AP009048/4125269‑4125405 | gCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:1304319‑M2/1‑70 (MQ=255) cacaCGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat < 1:3174088‑M2/71‑3 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat < 1:2045864‑M2/70‑3 (MQ=255) cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc > 1:1766209‑M2/1‑67 (MQ=255) cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:1726336‑M2/70‑4 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:3938842‑M2/69‑4 (MQ=255) aaaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct < 1:3658980‑M2/70‑9 (MQ=255) aaaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:4361035/1‑71 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagcta > 1:4395300‑M2/1‑61 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattca < 1:1721534‑M2/66‑6 (MQ=255) aaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaag > 1:419368‑M2/1‑60 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:1439951/1‑68 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGgag < 1:1744181/71‑1 (MQ=255) ggTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGgag > 1:251830/1‑69 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg > 1:3014260/1‑70 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg < 1:2717593/70‑1 (MQ=255) cGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc < 1:3839829/57‑1 (MQ=255) gAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcact < 1:4310501‑M2/71‑22 (MQ=255) aaCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactg < 1:753494‑M2/71‑23 (MQ=255) aaCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATg > 1:2210750/1‑70 (MQ=255) aCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct < 1:2911606‑M2/56‑9 (MQ=255) aCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc > 1:2236747‑M2/1‑48 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac < 1:3959625‑M2/62‑16 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa < 1:1349150/71‑1 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGa < 1:4323543/69‑1 (MQ=255) tgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:132160/1‑70 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:3382843‑M2/70‑26 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:2318786‑M2/70‑26 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:2170187/1‑54 (MQ=255) ctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggatt < 1:1806268‑M2/70‑27 (MQ=255) ctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAg < 1:319808/71‑1 (MQ=255) tgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattca > 1:4190234‑M2/1‑43 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat < 1:3780530‑M2/67‑26 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacact < 1:3507058‑M2/58‑17 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTa > 1:4248285/1‑71 (MQ=255) cTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca < 1:3242383‑M2/54‑15 (MQ=255) tttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagat < 1:4223820‑M2/70‑32 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatg > 1:3041808‑M2/1‑37 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa < 1:4294180/70‑1 (MQ=255) tACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAtt > 1:2431025/1‑71 (MQ=255) tACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt < 1:3522065/70‑1 (MQ=255) aCAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac < 1:1003140‑M2/71‑38 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac < 1:3892385‑M2/70‑38 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac < 1:349544‑M2/70‑38 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac < 1:3439299‑M2/70‑38 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaa < 1:431329‑M2/69‑37 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGc > 1:1278345/1‑71 (MQ=255) aCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgatt < 1:3638232‑M2/71‑42 (MQ=255) aCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgatt < 1:1757810‑M2/71‑42 (MQ=255) cAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg < 1:4143455‑M2/70‑43 (MQ=255) aGTCGTTTCACCCGCGAAAAAATAattcagctaagacac < 1:237014‑M2/39‑16 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagtt < 1:141621‑M2/70‑48 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagtt < 1:1994727‑M2/70‑48 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggatta > 1:2159816‑M2/1‑23 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgc < 1:1344326‑M2/41‑19 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac > 1:2359504‑M2/1‑22 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagacactgcact > 1:4588514‑M2/1‑22 (MQ=255) tCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:249397/54‑1 (MQ=255) tCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTc < 1:4458698/71‑1 (MQ=255) cGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:2861906‑M2/71‑51 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactg > 1:3346223‑M2/1‑20 (MQ=255) tttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:1316562/51‑1 (MQ=255) ttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaa > 1:158177/1‑41 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacgctgcactggattaagatgaaaacgattgaagttg < 1:2627397‑M2/65‑49 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat > 1:1856581‑M2/1‑17 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:4527961‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat > 1:2101154‑M2/1‑17 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:1771449‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:249279‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacg < 1:245619‑M2/55‑39 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTc < 1:4171591/61‑1 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCa > 1:130618/1‑62 (MQ=255) cACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:2446264‑M2/1‑16 (MQ=255) cACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCACCTCAATTCTGTCg > 1:173746/1‑70 (MQ=255) ccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaact < 1:1405294‑M2/71‑59 (MQ=255) acgcgaAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaa < 1:1052163‑M2/68‑57 (MQ=255) cgcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc < 1:4454403‑M2/71‑60 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactct > 1:2413532‑M2/1‑11 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc < 1:3622268‑M2/70‑60 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatg > 1:559606‑M2/1‑11 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:3676042/44‑1 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAt > 1:4497749/1‑71 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAt > 1:2451671/1‑71 (MQ=255) cgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactcta < 1:1626805‑M2/71‑62 (MQ=255) cgAAAAAATAattcagctaagacactgcactggatt > 1:2387697‑M2/1‑10 (MQ=255) cgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa < 1:4312637/44‑1 (MQ=255) gAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaa > 1:3545483‑M2/1‑9 (MQ=255) aaaaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactcta < 1:4141296‑M2/69‑62 (MQ=255) aaaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAtttt < 1:1120074/71‑1 (MQ=255) aaaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacag < 1:1361344‑M2/71‑65 (MQ=255) aaaaaTAattcagctaagacactgcactggattaagatgaa > 1:835267‑M2/1‑7 (MQ=255) aaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTg > 1:1816914/1‑44 (MQ=255) aaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTg > 1:1895208/1‑71 (MQ=255) aaaaTAattcagctaagccactgcactggattaagatgaaaacgattgaagttgatgatgaa < 1:1566484‑M2/62‑57 (MQ=255) aaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc > 1:1048446‑M2/1‑6 (MQ=255) aaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGc < 1:1456572/71‑1 (MQ=255) aaaTAattcagctaagacactgcactggattaagatgaaaacgattg > 1:3151213‑M2/1‑5 (MQ=255) aaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGt > 1:3718506/1‑57 (MQ=255) aataattcagctaagacactgcactggattaagatgaaaacgattgaagttgatga > 1:4145231‑M2/1‑4 (MQ=255) aataatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGccc > 1:4107558/1‑71 (MQ=255) | GCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCC > AP009048/4125269‑4125405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |