| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1481996 = | 31 (0.620) | 11 (0.230) +AT |
10/98 | NT | 38.2% | coding (1145/1758 nt) | ynbC | predicted hydrolase |
| ? | AP009048 | 2564137 = | 6 (0.120) | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
ACCTCTTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATG > AP009048/2564067‑2564206 | aCCTCTTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCt > 1:2001974/1‑71 (MQ=255) ctctTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCt > 1:2928011/1‑69 (MQ=255) ctctTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCt > 1:243331/1‑69 (MQ=255) ctctTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCa < 1:4474228/71‑1 (MQ=255) ctTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCag > 1:1153577/1‑70 (MQ=255) ttACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCag > 1:1820828/1‑67 (MQ=255) ttACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGACGTTCCCTCagg > 1:1989781/1‑68 (MQ=255) tACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaag < 1:1501214/70‑1 (MQ=255) cATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaagaa < 1:2070395/70‑3 (MQ=255) cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaagaa > 1:4569546/1‑50 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaagaa < 1:47728/50‑3 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaa < 1:2002475/47‑1 (MQ=255) gCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCaggaag < 1:1024658/46‑1 (MQ=255) ccgctggcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa < 1:374665‑M2/52‑1 (MQ=255) cgctggcgaataccgcatTCAGGAAGGAAATGCGAGTGATTtc < 1:4066566‑M2/25‑1 (MQ=255) cgctggcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt > 1:800707‑M2/19‑64 (MQ=255) gctggcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa > 1:731145‑M2/18‑69 (MQ=255) cgctggcgaatacccatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 1:1922043‑M2/54‑1 (MQ=255) ctggcgaataccgcatTCAGGAAGGAAATGCGAGTGAttt > 1:3429793‑M2/17‑40 (MQ=255) tggcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa < 1:111552‑M2/54‑1 (MQ=255) gcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa > 1:1437388‑M2/14‑69 (MQ=255) gcgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAag < 1:1036551‑M2/57‑1 (MQ=255) cgaataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:2329770‑M2/56‑1 (MQ=255) ataccgcatTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAaga > 1:2624918‑M2/10‑67 (MQ=255) gcatTCAGGAAGGAAATGCGAGTGATTTCACTGTCACCGGCACAACCGATc > 1:173415‑M2/5‑51 (MQ=255) catTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:2798614‑M2/4‑46 (MQ=255) catTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc > 1:1278684‑M2/4‑50 (MQ=255) catTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCaa > 1:1381808‑M2/4‑71 (MQ=255) atTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAAt < 1:2407845‑M2/69‑1 (MQ=255) atTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAAGCGTACCAAt < 1:3393734‑M2/69‑1 (MQ=255) tTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATg < 1:4587875‑M2/70‑1 (MQ=255) | ACCTCTTTTACATCCTTAAACTGATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATG > AP009048/2564067‑2564206 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |