New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 228918079 (1.070)4 (0.060) 3/88 NT 6.3% intergenic (+489/‑109) argE/ppc acetylornithine deacetylase/phosphoenolpyruvate carboxylase
?Exported = 2289203 49 (0.760)intergenic (+512/‑86) argE/ppc acetylornithine deacetylase/phosphoenolpyruvate carboxylase

Only 100 of 108 total aligned reads displayed.

GTAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATA  >  Exported/2289118‑2289249
                                                              |                                                                     
gTAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCt                                                               <  1:1075290/71‑1 (MQ=255)
 tAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:3042386/1‑71 (MQ=255)
 tAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:2092234/1‑71 (MQ=255)
 tAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:2550540/1‑71 (MQ=255)
  aaaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:2826628/1‑70 (MQ=255)
  aaaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:4204868/1‑70 (MQ=255)
  aaaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:917096/1‑70 (MQ=255)
  aaaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:4314154/1‑70 (MQ=255)
  aaaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCtt                                                              >  1:2236363/1‑70 (MQ=255)
   aaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTta                                                            >  1:2127103/1‑71 (MQ=255)
   aaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTta                                                            >  1:1896468/1‑71 (MQ=255)
   aaTTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTta                                                            >  1:831638/1‑71 (MQ=255)
       ccTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaa                                                         <  1:1674296/70‑1 (MQ=255)
       ccTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaa                                                         <  1:4053527/70‑1 (MQ=255)
        cTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:2226503/71‑1 (MQ=255)
        cTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:3712316/71‑1 (MQ=255)
        cTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:3257435/71‑1 (MQ=255)
        cTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:1121897/71‑1 (MQ=255)
        cTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaa                                                        <  1:1015318/70‑1 (MQ=255)
           cTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgac                                                    >  1:2917019/1‑71 (MQ=255)
             atttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacga                                                  >  1:2295875/1‑71 (MQ=255)
             atttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacga                                                  >  1:2735575/1‑71 (MQ=255)
              tttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacg                                                   <  1:2949384/69‑1 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacgac                                                 >  1:4075702/1‑70 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacgac                                                 >  1:761165/1‑70 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacgac                                                 >  1:1346119/1‑70 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacgac                                                 >  1:1252828/1‑70 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacgac                                                 >  1:1058145/1‑70 (MQ=255)
               ttattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAgacga                                                  >  1:1565464/1‑69 (MQ=255)
                tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:935086/70‑1 (MQ=255)
                tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:4207734/70‑1 (MQ=255)
                tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:4577694/70‑1 (MQ=255)
                tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                >  1:2429187/1‑70 (MQ=255)
                tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:2060399/70‑1 (MQ=255)
                  ttCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaa                                              >  1:41884‑M2/1‑68 (MQ=255)
                  ttCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa                                               <  1:1801771‑M2/69‑2 (MQ=255)
                   tCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaa                                              <  1:4542812‑M2/69‑3 (MQ=255)
                    cGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaaaag                                           <  1:1827856‑M2/71‑6 (MQ=255)
                      tttGCTTAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa                                               >  1:2670711‑M2/1‑64 (MQ=255)
                      tttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTcgtcgtcttttataaagccacgtaa                                              >  1:130691‑M1/1‑41 (MQ=255)
                      tttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa                                               >  1:1833563‑M2/1‑64 (MQ=255)
                      tttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa                                               >  1:2115609‑M2/1‑64 (MQ=255)
                       ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:4426686/56‑1 (MQ=255)
                       ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATaaaa                                                       <  1:1876388/56‑1 (MQ=255)
                       ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca                                         >  1:3198442/1‑70 (MQ=255)
                       ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca                                         >  1:4175988/1‑70 (MQ=255)
                        tGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca                                         >  1:162450/1‑69 (MQ=255)
                            gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc                                   >  1:2912048/1‑71 (MQ=255)
                            gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc                                   >  1:763578/1‑71 (MQ=255)
                            gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc                                   >  1:4697303/1‑71 (MQ=255)
                             aaGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc                                     <  1:2074932/68‑1 (MQ=255)
                              aGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGa                                 <  1:2469299/71‑1 (MQ=255)
                               gCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg                                >  1:1543195/1‑71 (MQ=255)
                               gCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg                                >  1:2626021/1‑71 (MQ=255)
                                cGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg                                >  1:3723765/1‑70 (MQ=255)
                                  aTTTCGCAGCATTTGACGTCACCGCTTTTcgtcgtcttttataaagccacgta                                               <  1:3863902‑M1/53‑25 (MQ=255)
                                   tttCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCata                            <  1:65660/71‑1 (MQ=255)
                                    ttCGCAGCATTTGACGTCACCGCTTTTcgtcgtcttttataaagccacgtaaa                                             >  1:2074702‑M1/1‑27 (MQ=255)
                                    ttCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTtat                                                           <  1:655170/39‑1 (MQ=255)
                                    ttCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTtat                                                           <  1:1872230/39‑1 (MQ=255)
                                        cagcaTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTcgc                       <  1:545474/71‑1 (MQ=255)
                                          gcaTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCgcgc                     >  1:241239/1‑71 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:3065414/43‑1 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg                                                <  1:4549167/43‑1 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGc                               >  1:3422587/1‑60 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCa                              >  1:3417336/1‑61 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCa                              >  1:2240235/1‑61 (MQ=255)
                                           caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCgcgc                     >  1:2270076/1‑70 (MQ=255)
                                             tttGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa                                       <  1:2096965/50‑1 (MQ=255)
                                             tttGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCaa                  >  1:3094819/1‑71 (MQ=255)
                                               tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc                                     >  1:2694302/1‑50 (MQ=255)
                                               tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc                                     >  1:380463/1‑50 (MQ=255)
                                               tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaag                                      >  1:2422968/1‑49 (MQ=255)
                                                   gTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGAc            >  1:3646362/1‑71 (MQ=255)
                                                     cACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGcc                    <  1:790321/61‑1 (MQ=255)
                                                      aCCGCTTTTACGTGGCTTTATAAAAGCCGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGt          >  1:811507/1‑70 (MQ=255)
                                                      aCCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGt          >  1:565166/1‑70 (MQ=255)
                                                        cGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa                                       <  1:2820382/39‑1 (MQ=255)
                                                        cGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa                                       <  1:3180449/39‑1 (MQ=255)
                                                        cGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg         >  1:3749917/1‑69 (MQ=255)
                                                         gCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg      >  1:4417555/1‑71 (MQ=255)
                                                         gCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg      >  1:1335123/1‑71 (MQ=255)
                                                          cTTTTcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaacg     <  1:1827856‑M1/71‑67 (MQ=255)
                                                          cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg         <  1:2088165/67‑1 (MQ=255)
                                                          cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg         <  1:1611374/67‑1 (MQ=255)
                                                          cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg      >  1:3094445/1‑70 (MQ=255)
                                                          cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg      >  1:193616/1‑70 (MQ=255)
                                                           ttttACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCata                            >  1:2324268/1‑47 (MQ=255)
                                                            tttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaa                     >  1:2074702‑M2/1‑26 (MQ=255)
                                                             ttcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaacgaa   >  1:41884‑M1/1‑2 (MQ=255)
                                                             ttcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaacga    <  1:4542812‑M1/69‑68 (MQ=255)
                                                             ttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa       >  1:130691‑M2/1‑25 (MQ=255)
                                                             ttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa       >  1:505250‑M2/1‑25 (MQ=255)
                                                             ttACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATAtt                          >  1:3706398/1‑47 (MQ=255)
                                                              tcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaacgaa   <  1:1801771‑M1/69‑69 (MQ=255)
                                                              tcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa       >  1:1833563‑M1/1‑1 (MQ=255)
                                                              tcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa       >  1:2115609‑M1/1‑1 (MQ=255)
                                                              tcgtcgtcttttataaagccacgtaaaagcggtgacgtcaaatgctgcgaaatcgcttaagcaaa       >  1:2670711‑M1/1‑1 (MQ=255)
                                                              tACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaat                   <  1:3863902‑M2/53‑30 (MQ=255)
                                                              tACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATa  <  1:3191080/70‑1 (MQ=255)
                                                              |                                                                     
GTAAATTCCTGCTATTTATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATA  >  Exported/2289118‑2289249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.