| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2289180 | 79 (1.070) | 4 (0.060) | 3/88 | NT | 6.3% | intergenic (+489/‑109) | argE/ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase |
| ? | Exported | = 2289203 | 49 (0.760) | intergenic (+512/‑86) | argE/ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase | |||||
TATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGATGG > Exported/2289134‑2289273 | tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:935086/70‑1 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:3304048/70‑1 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg > 1:2429187/1‑70 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:4577694/70‑1 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:2060399/70‑1 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg > 1:1631147/1‑70 (MQ=255)tattCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:4207734/70‑1 (MQ=255) ttCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaa > 1:41884‑M2/1‑68 (MQ=255) ttCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa < 1:1801771‑M2/69‑2 (MQ=255) tCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaa < 1:4542812‑M2/69‑3 (MQ=255) cGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGaaaag < 1:1827856‑M2/71‑6 (MQ=255) tttGCTTAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa > 1:2670711‑M2/1‑64 (MQ=255) tttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa > 1:2115609‑M2/1‑64 (MQ=255) tttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGa > 1:1833563‑M2/1‑64 (MQ=255) ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca > 1:3198442/1‑70 (MQ=255) ttGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca > 1:4175988/1‑70 (MQ=255) tGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca > 1:162450/1‑69 (MQ=255) gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc > 1:2912048/1‑71 (MQ=255) gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc > 1:4697303/1‑71 (MQ=255) gAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGccc > 1:763578/1‑71 (MQ=255) aaGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc < 1:2074932/68‑1 (MQ=255) aGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGa < 1:2469299/71‑1 (MQ=255) gCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg > 1:2626021/1‑71 (MQ=255) gCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg > 1:1543195/1‑71 (MQ=255) cGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAg > 1:3723765/1‑70 (MQ=255) tttCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCata < 1:65660/71‑1 (MQ=255) cagcaTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTcgc < 1:4126996/71‑1 (MQ=255) cagcaTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTcgc < 1:545474/71‑1 (MQ=255) gcaTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCgcgc > 1:241239/1‑71 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:3065414/43‑1 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGacgacg < 1:4549167/43‑1 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGc > 1:3422587/1‑60 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCa > 1:2240235/1‑61 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCa > 1:3417336/1‑61 (MQ=255) caTTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCgcgc > 1:2270076/1‑70 (MQ=255) tttGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa < 1:2286930/50‑1 (MQ=255) tttGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa < 1:2096965/50‑1 (MQ=255) tttGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCaa > 1:3094819/1‑71 (MQ=255) tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc > 1:2694302/1‑50 (MQ=255) tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaagc > 1:380463/1‑50 (MQ=255) tGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaag > 1:2422968/1‑49 (MQ=255) gTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAaaagca < 1:952808/42‑1 (MQ=255) gTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGAc > 1:3646362/1‑71 (MQ=255) tCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGAc > 1:2074030/1‑70 (MQ=255) cACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGcc < 1:790321/61‑1 (MQ=255) aCCGCTTTTACGTGGCTTTATAAAAGCCGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGt > 1:811507/1‑70 (MQ=255) aCCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGt > 1:565166/1‑70 (MQ=255) cGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa < 1:3180449/39‑1 (MQ=255) cGCTTTTACGTGGCTTTATAAAAGACGACGAaaagcaaa < 1:2820382/39‑1 (MQ=255) cGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg > 1:3749917/1‑69 (MQ=255) gCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:1335123/1‑71 (MQ=255) gCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:4417555/1‑71 (MQ=255) cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg < 1:1611374/67‑1 (MQ=255) cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTg < 1:2088165/67‑1 (MQ=255) cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:193616/1‑70 (MQ=255) cTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:3094445/1‑70 (MQ=255) ttttACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCata > 1:2324268/1‑47 (MQ=255) tttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaa > 1:2074702‑M2/1‑26 (MQ=255) ttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa > 1:130691‑M2/1‑25 (MQ=255) ttACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaatcgcttcagcaaa > 1:505250‑M2/1‑25 (MQ=255) ttACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATAtt > 1:3706398/1‑47 (MQ=255) tACGTGGCTTTATAAAAGACGACGaaaagcggtgacgtcaaatgctgcgaaat < 1:3863902‑M2/53‑30 (MQ=255) tACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATa < 1:3191080/70‑1 (MQ=255) aCGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATAc < 1:4695383/70‑1 (MQ=255) cGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACa < 1:3643818/70‑1 (MQ=255) tGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg < 1:3955261/62‑1 (MQ=255) tGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAggg > 1:3953241/1‑71 (MQ=255) ttATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTAt > 1:4205339/1‑70 (MQ=255) tataAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGa < 1:476575/49‑1 (MQ=255) tataAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATc > 1:3742505/1‑70 (MQ=255) ataAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCa < 1:1798630/70‑1 (MQ=255) ataAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCa > 1:46143/1‑70 (MQ=255) taAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCaaa > 1:3382465/1‑71 (MQ=255) taAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCaaa > 1:1449500/1‑71 (MQ=255) taAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCa < 1:3418164/69‑1 (MQ=255) aaaGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAAc > 1:3731809/1‑70 (MQ=255) aaaGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAAc > 1:550121/1‑70 (MQ=255) aaGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:1884090/1‑51 (MQ=255) aaGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAg > 1:2037368/1‑51 (MQ=255) acgacgAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATa > 1:1285156/1‑52 (MQ=255) acgacgAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACa > 1:1159140/1‑54 (MQ=255) gacgaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGa < 1:4532192/71‑1 (MQ=255) gacgaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGa < 1:656395/71‑1 (MQ=255) gacgaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGa < 1:889397/71‑1 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAgg > 1:53792/1‑44 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAgg > 1:4062259/1‑44 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAgg > 1:760487/1‑44 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAgg > 1:1210221/1‑44 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAACCGATAAGATgg > 1:4559278/1‑71 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGa > 1:2154771/1‑63 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGAt > 1:2615800/1‑69 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGATgg > 1:2488097/1‑71 (MQ=255) gaAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGATgg > 1:4459856/1‑71 (MQ=255) | TATTCGTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCTTTTACGTGGCTTTATAAAAGACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGATGG > Exported/2289134‑2289273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |