| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2543149 = | 133 (1.810) | 6 (0.090) | 3/88 | NT | 5.0% | coding (987/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | Exported | 2543186 = | 110 (1.700) | coding (1024/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
Only 100 of 192 total aligned reads displayed.
TAATTCACGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAG > Exported/2543080‑2543217 | taagaagtgagttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAg < 1:2764268‑M1/2‑1 (MQ=255)taagaagtgagttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAg < 1:3454235‑M1/2‑1 (MQ=255) aaTTCACGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAg > 1:954057/1‑70 (MQ=255) aaTTCACGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAg > 1:3153161/1‑70 (MQ=255) aaTTCACGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAg > 1:3721107/1‑70 (MQ=255) agaagtgagttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAGTa < 1:3838054‑M1/4‑1 (MQ=255) aagtgagttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAGTATc < 1:3320314‑M1/6‑1 (MQ=255) agtgagttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAGTATc < 1:3011363‑M1/6‑1 (MQ=255) cGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATcccc < 1:2671642/71‑1 (MQ=255) tACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCaa < 1:171598/71‑1 (MQ=255) agttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAGTAt < 1:3253989‑M1/5‑1 (MQ=255) gttaaaactcacttcttatctatacaacttaatctctttactgaattagttaaagtttcAg > 1:3929478‑M1/60‑61 (MQ=255) cTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACa < 1:3083108/71‑1 (MQ=255) cTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACa < 1:2390720/71‑1 (MQ=255) cGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:3756938/1‑70 (MQ=255) cGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata < 1:4464930/70‑1 (MQ=255) cGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:1949290/1‑70 (MQ=255) gAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACAtata > 1:581961/1‑70 (MQ=255) tCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTa < 1:3978360/70‑1 (MQ=255) tCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTa < 1:4369062/70‑1 (MQ=255) cccTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCaa > 1:2791611/1‑58 (MQ=255) cccTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCaa > 1:1612205/1‑58 (MQ=255) cccTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTa < 1:3181076/69‑1 (MQ=255) ccTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTaaaa < 1:2630652/71‑1 (MQ=255) gCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:2571434/1‑57 (MQ=255) gCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:4162397/1‑57 (MQ=255) gCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:3872724/1‑57 (MQ=255) gCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACata > 1:4334140/1‑57 (MQ=255) atctatacaacttaatctctttactgaattagttaaagtttcAg < 1:1134916‑M1/2‑1 (MQ=255) atctatacaacttaatctctttactgaattagttaaagtttcAg < 1:1180176‑M1/2‑1 (MQ=255) atctatacaacttaatctctttactgaattagttaaagtttcAg < 1:16919‑M1/2‑1 (MQ=255) tttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAg < 1:406920/41‑1 (MQ=255) tttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAg < 1:4401143/41‑1 (MQ=255) tttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATc < 1:1083789/70‑1 (MQ=255) ttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:4491932/1‑65 (MQ=255) ttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:1579296/1‑65 (MQ=255) ttAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:3364882/1‑65 (MQ=255) tacaacttaatctctttactgaattagttaaagtttcAGTATCCCCAACATATACGGTAAAAGATATc > 1:2063063‑M1/38‑68 (MQ=255) tAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa > 1:1892465/1‑70 (MQ=255) tAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa > 1:2906021/1‑70 (MQ=255) tAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:4036120/70‑1 (MQ=255) tAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:4694854/70‑1 (MQ=255) aaTTTGGTCCCCGAATCATCATAAATCTATACAAATa > 1:1266090/1‑37 (MQ=255) aaTTTGGTCCCCGAATCATCATAAATCTATACAAATa > 1:1310213/1‑37 (MQ=255) aaTTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:455619/69‑1 (MQ=255) caacttaatctctttactgaattagttaaagtttcAg < 1:653815‑M1/2‑1 (MQ=255) caacttaatctctttactgaattagttaaagtttcAg < 1:1416063‑M1/2‑1 (MQ=255) aTTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATAc > 1:1346679/1‑71 (MQ=255) tttGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:4225613/1‑61 (MQ=255) tttGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:616619/1‑61 (MQ=255) tGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTg > 1:3694566/1‑70 (MQ=255) gTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaa < 1:1062668/70‑1 (MQ=255) gTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaa < 1:151177/70‑1 (MQ=255) tCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:2523626/62‑1 (MQ=255) tCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:3407167/62‑1 (MQ=255) aatctctttactgaattagttaaagtttcAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaaa > 1:4615151‑M1/30‑70 (MQ=255) aatctctttactgaattagttaaagtttcAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaaa > 1:4527266‑M1/30‑70 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGata < 1:4455617/56‑1 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGata < 1:3204970/56‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:3533128/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1112404/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1786540/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:1999908/1‑70 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:3835573/1‑70 (MQ=255) cGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaaa > 1:320025/1‑66 (MQ=255) atcatcATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAAc > 1:2113034/1‑70 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:4699743/1‑46 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:1393497/1‑46 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGa > 1:4156717/1‑46 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:2405333/52‑1 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:1587811/52‑1 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTaa < 1:33541/70‑1 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAt > 1:1673306/1‑71 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAg < 1:874999/44‑1 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAg < 1:2732134/44‑1 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAg < 1:1743181/44‑1 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt < 1:4505508/71‑1 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt < 1:1221748/71‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:2127976/55‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:2343563/55‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAAc > 1:467801/1‑64 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt > 1:1545227/1‑69 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt > 1:498917/1‑69 (MQ=255) aaaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAg > 1:3712471/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:2431400/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:1149933/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa < 1:2433508/71‑1 (MQ=255) tCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa > 1:1121739/1‑69 (MQ=255) cTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt > 1:708549/1‑55 (MQ=255) cTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTaa > 1:3999759/1‑57 (MQ=255) tataCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:4614903/48‑1 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGa > 1:1919419/1‑38 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGa < 1:236274/38‑1 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAAc > 1:3602829/1‑53 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAAc > 1:4097779/1‑53 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAtt < 1:206494/71‑1 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAt > 1:2306263/1‑70 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg > 1:1050060/1‑71 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:7009/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:322266/71‑1 (MQ=255) | TAATTCACGTACTCCGGAATATCCCTCGCATTTAATTTGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAG > Exported/2543080‑2543217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |