| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2543149 = | 133 (1.810) | 6 (0.090) | 3/88 | NT | 5.0% | coding (987/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | Exported | 2543186 = | 110 (1.700) | coding (1024/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
Only 100 of 173 total aligned reads displayed.
TGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTA > Exported/2543117‑2543254 | tGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTg > 1:2114851/1‑70 (MQ=255) gTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaa < 1:4510505/70‑1 (MQ=255) cccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:1989927/1‑71 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1786540/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:1112404/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACttt < 1:4058845/71‑1 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:3835573/1‑70 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:1999908/1‑70 (MQ=255) ccGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACtt > 1:3454483/1‑70 (MQ=255) cGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGaaa > 1:320025/1‑66 (MQ=255) cGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAAc > 1:1530641/1‑67 (MQ=255) gAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTaa > 1:2419118/1‑71 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa > 1:3570698/1‑58 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTaa < 1:33541/70‑1 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAt > 1:1593996/1‑71 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAt > 1:1673306/1‑71 (MQ=255) atcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAt > 1:3059330/1‑71 (MQ=255) tcatAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt < 1:4505508/71‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:2127976/55‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:2343563/55‑1 (MQ=255) atAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAAtt > 1:120826/1‑69 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:2836634/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:2431400/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:4449352/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:1149933/1‑70 (MQ=255) aaTCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa < 1:3916874/71‑1 (MQ=255) tCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa > 1:1121739/1‑69 (MQ=255) cTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTaa > 1:3689083/1‑57 (MQ=255) tataCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGa < 1:4614903/48‑1 (MQ=255) taCAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAgaga < 1:397606/71‑1 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAAc > 1:4097779/1‑53 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAtt < 1:206494/71‑1 (MQ=255) cAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGAt > 1:2306263/1‑70 (MQ=255) tttcagtatcgatatcttttaccgtatatgttggggatactGAAACTTTAACTAATTCAGTAAAGAGAtt > 1:4527266‑M2/42‑70 (MQ=255) tttcagtatcgatatcttttaccgtatatgttggggatactGAAACTTTAACTAATTCAGTAAAGAGAtt > 1:2930782‑M2/42‑70 (MQ=255) tttcagtatcgatatcttttaccgtatatgttggggatactGAAACTTTAACTAATTCAGTAAAGAGAtt > 1:4615151‑M2/42‑70 (MQ=255) aaaTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTa < 1:2549794/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:322266/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:7009/71‑1 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg > 1:1050060/1‑71 (MQ=255) aTAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg > 1:1249572/1‑71 (MQ=255) GTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg > 1:3785292‑M1/1‑71 (MQ=255) GTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg > 1:1362973‑M1/1‑71 (MQ=255) GTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg > 1:4580229‑M1/1‑71 (MQ=255) GTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg > 1:1003952‑M1/1‑71 (MQ=255) TATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAgaga > 1:2308584‑M1/1‑62 (MQ=255) gatatcttttaccgtatatgttggggatactGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:2063063‑M2/32‑68 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGt > 1:168191/1‑51 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa < 1:2894647/54‑1 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa < 1:707241/54‑1 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGtata < 1:2267336/70‑1 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:3705519/1‑68 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:4269454/1‑68 (MQ=255) cccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:3150422/1‑68 (MQ=255) ccAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa < 1:4605187/51‑1 (MQ=255) cAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGa > 1:1608272/1‑70 (MQ=255) cAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGa > 1:4187914/1‑70 (MQ=255) aaCATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATa < 1:2366432/71‑1 (MQ=255) aaCATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATa < 1:4304414/71‑1 (MQ=255) aCATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGtata > 1:2483552/1‑66 (MQ=255) aCATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGtata > 1:3301102/1‑66 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCa > 1:2246193/1‑42 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaaga < 1:3117758/70‑1 (MQ=255) tataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaaga < 1:2052530/70‑1 (MQ=255) ataCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGtat > 1:3590641/1‑61 (MQ=255) taCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGt < 1:27303/71‑1 (MQ=255) taCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGt < 1:4460310/71‑1 (MQ=255) taCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGt < 1:3217231/71‑1 (MQ=255) aCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:763934/1‑44 (MQ=255) aCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:921291/1‑44 (MQ=255) aCGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTa < 1:3919009/42‑1 (MQ=255) cGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:4025980/1‑43 (MQ=255) cGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTaaa > 1:1944717/1‑43 (MQ=255) cGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGa < 1:3792555/71‑1 (MQ=255) gTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:3586016/50‑1 (MQ=255) gTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAg < 1:4667030/50‑1 (MQ=255) tAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtt < 1:1859977/71‑1 (MQ=255) aaaGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGtttt < 1:4672835/71‑1 (MQ=255) aGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGt > 1:968720/1‑66 (MQ=255) gATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:1098817/1‑49 (MQ=255) gATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGta > 1:3754633/1‑49 (MQ=255) atatCGATACTGAAACTTTAACTAATTCAGTAAaga < 1:1623735/36‑1 (MQ=255) atatCGATACTGAAACTTTAACTAATTCAGTAAaga < 1:848033/36‑1 (MQ=255) tatCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTc < 1:2107272/71‑1 (MQ=255) atCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATaa < 1:1073841/53‑1 (MQ=255) atCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCa > 1:67267/1‑71 (MQ=255) tCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCAc < 1:2554512/71‑1 (MQ=255) tCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCAc < 1:3372687/71‑1 (MQ=255) gatactGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCActt < 1:4685022‑M2/65‑1 (MQ=255) gatactGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCActt < 1:3320314‑M2/65‑1 (MQ=255) atactGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACt < 1:3253989‑M2/60‑1 (MQ=255) tactGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCActtct < 1:3838054‑M2/67‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg < 1:653815‑M2/35‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTg < 1:1416063‑M2/35‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGAt < 1:16919‑M2/42‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGAt < 1:1134916‑M2/42‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAAc > 1:1085794‑M2/3‑61 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTa < 1:474392‑M2/69‑1 (MQ=255) ctGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTa < 1:2764268‑M2/69‑1 (MQ=255) gAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCAc < 1:3631861/63‑1 (MQ=255) | TGGTCCCCGAATCATCATAAATCTATACAAATAGTATCCCCAACATATACGGTAAAAGATATCGATACTGAAACTTTAACTAATTCAGTAAAGAGATTAAGTTGTATAGATAAGAAGTGAGTTTTAACTCACTTCTTA > Exported/2543117‑2543254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |