| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 974186 = | 93 (1.580) | 10 (0.190) | 4/90 | NT | 11.2% | coding (961/1023 nt) | lsrB | AI2 transporter |
| ? | Exported | 974243 = | 77 (1.480) | coding (1018/1023 nt) | lsrB | AI2 transporter | |||||
AAGTAATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/974260‑974186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgatTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAAT > Exported/974243‑974312 AAGTAATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTA > 1:167105/1‑71AAGTAATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTA > 1:2781477/1‑71 ATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT < 1:3707099/70‑1 ATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT < 1:289859/70‑1 AATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT > 1:3483334/1‑58 AATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT > 1:3204556/1‑58 CTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGA > 1:1550863/1‑63 CTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGA > 1:155312/1‑63 CTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGA > 1:1588970/1‑63 TTTGTTGAATATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGG > 1:1546407/1‑71 ATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGC < 1:642489/62‑1 ATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGC < 1:438503/62‑1 ATCACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGC < 1:2201510/62‑1 CACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAG > 1:1404204/1‑62 CACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAG > 1:1282759/1‑62 CACGCGCTCCGGTAACAGTACGATTTCTGATGTGCATAACTTAACGGAGTAAGTTATGGCAG > 1:391353/1‑62 TACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGAT > 1:2956246/1‑71 TACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGAT < 1:3131151/71‑1 TACGATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGA > 1:414344/1‑70 GATTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTT > 1:3270579/1‑70 TTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAAT > 1:1289455/1‑71 TTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAAT < 1:100003/71‑1 AAGTAATGCACATCAGAAATCGTATTTGCCGATATTCTCTTTGTTGAATATCACGCGCTCCGGTAACAGTACGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/974260‑974186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacgatTTCTGATGTGCATTACTTAACGGAGTAAGTTATGGCAGATGATTTAAGTCGAACACAATAAAGATTTAAT > Exported/974243‑974312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |