| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 974186 = | 93 (1.580) | 10 (0.190) | 4/90 | NT | 11.2% | coding (961/1023 nt) | lsrB | AI2 transporter |
| ? | Exported | 974243 = | 77 (1.480) | coding (1018/1023 nt) | lsrB | AI2 transporter | |||||
Only 100 of 136 total aligned reads displayed.
GGGCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCAT > Exported/974116‑974255 | attaaatctttattgtgttcgacttaaatcatctgccataacttactccgttaagtaatgcacatcagaaa < 1:100003‑M1/1‑1 (MQ=255)attaaatctttattgtgttcgacttaaatcatctgccataacttactccgttaagtaatgcacatcagaaa > 1:1289455‑M1/71‑71 (MQ=255) ggCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCAt < 1:3049011/71‑1 (MQ=255) ggCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCAt < 1:713334/71‑1 (MQ=255) ggCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCAt < 1:3383293/71‑1 (MQ=255) gTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGt < 1:3167734/71‑1 (MQ=255) tAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCa < 1:1894106/66‑1 (MQ=255) tAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCa < 1:3236095/66‑1 (MQ=255) atctttattgtgttcgacttaaatcatctgccataacttactccgttaagtaatgcacatcagaaATCGTa > 1:2956246‑M1/66‑71 (MQ=255) tctttattgtgttcgacttaaatcatctgccataacttactccgttaagtaatgcacatcagaaATCGTa > 1:414344‑M1/65‑70 (MQ=255) tCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGt < 1:2731733/71‑1 (MQ=255) aGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTAc > 1:3390748/1‑66 (MQ=255) gTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTAcc > 1:439112/1‑71 (MQ=255) ttGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCg < 1:2204825/71‑1 (MQ=255) aGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAgc < 1:2633534/71‑1 (MQ=255) tcGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGt > 1:1064127/1‑71 (MQ=255) cGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGt > 1:3063169/1‑70 (MQ=255) gCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTAc > 1:914574/1‑53 (MQ=255) gCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTAc > 1:3058975/1‑53 (MQ=255) gCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGa > 1:2007205/1‑71 (MQ=255) cAAACAGCGTTCAGGGCTATGACTACGAAGCGTATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGata < 1:3663098/71‑1 (MQ=255) cAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGata < 1:458684/71‑1 (MQ=255) cAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGata < 1:364602/71‑1 (MQ=255) aaaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCg > 1:2458050/1‑58 (MQ=255) aaaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGatat > 1:2331184/1‑71 (MQ=255) aaaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGatat > 1:255490/1‑71 (MQ=255) aaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATAtt < 1:2894418/71‑1 (MQ=255) aaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATAtt < 1:2995543/71‑1 (MQ=255) aaCAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATAtt > 1:2555720/1‑71 (MQ=255) ctgccataacttactccgttaagttatgcacatcagaaATCGTACTGTTACCGGAGCGCGTg > 1:391353‑M1/39‑62 (MQ=255) ctgccataacttactccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTg > 1:1404204‑M1/39‑62 (MQ=255) ctgccataacttactccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTg > 1:1282759‑M1/39‑62 (MQ=255) cGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaaca < 1:25637/71‑1 (MQ=255) cGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaaca < 1:2339913/71‑1 (MQ=255) cGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaac > 1:1864786/1‑70 (MQ=255) gccataacttactccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGat < 1:642489‑M1/26‑1 (MQ=255) gccataacttactccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGat < 1:2201510‑M1/26‑1 (MQ=255) gTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCAt < 1:3493589/38‑1 (MQ=255) gTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaaca > 1:511083/1‑70 (MQ=255) ccataacttactccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGATATTCAACaaa > 1:1546407‑M1/36‑71 (MQ=255) tCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaaca > 1:1807031/1‑68 (MQ=255) cAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACaaa > 1:486894/1‑69 (MQ=255) cAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGAGTGATATTCAACaaa > 1:1188509/1‑69 (MQ=255) ggCTATGACTACGAAGCGGATGGTAATGGCATCGTa < 1:1895/36‑1 (MQ=255) ggCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAg > 1:935640/1‑48 (MQ=255) ggCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGaa > 1:637639/1‑71 (MQ=255) gCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAat < 1:525946/71‑1 (MQ=255) tATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAatat > 1:327396/1‑71 (MQ=255) tATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAatat > 1:2080354/1‑71 (MQ=255) aTGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATc > 1:2533545/1‑71 (MQ=255) tccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGATATTCAACAAagag > 1:1588970‑M1/25‑63 (MQ=255) tccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGATATTCAACAAagag > 1:1550863‑M1/25‑63 (MQ=255) tccgttaagtaatgcacatcagaaATCGTACTGTTACCGGAGCGCGTGATATTCAACAAagag > 1:155312‑M1/25‑63 (MQ=255) cTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa < 1:3271512/71‑1 (MQ=255) cTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa < 1:3224261/71‑1 (MQ=255) cTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa < 1:2037975/71‑1 (MQ=255) cTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa < 1:641707/71‑1 (MQ=255) tACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa > 1:2735013/1‑70 (MQ=255) tACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCa > 1:2697694/1‑70 (MQ=255) aCGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCaaa > 1:816857/1‑71 (MQ=255) aCGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCaa > 1:399698/1‑70 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAagag > 1:1667687/1‑57 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAagag > 1:698371/1‑57 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa < 1:1664643/71‑1 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa < 1:31404/71‑1 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa < 1:2805046/71‑1 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa < 1:1225635/71‑1 (MQ=255) gAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa > 1:48476/1‑71 (MQ=255) aaGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATAc < 1:33013/71‑1 (MQ=255) aGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACg < 1:1322368/71‑1 (MQ=255) gCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaacaa < 1:744963/50‑1 (MQ=255) gCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTcaacaa < 1:1931774/50‑1 (MQ=255) gATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGata < 1:2868455/39‑1 (MQ=255) gATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:451568/71‑1 (MQ=255) gATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:2852662/71‑1 (MQ=255) gATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:1228416/71‑1 (MQ=255) tGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCt > 1:3068305/1‑71 (MQ=255) tGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCt < 1:1662386/71‑1 (MQ=255) gTAATGTCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGa > 1:5900/1‑71 (MQ=255) gTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTg < 1:3503636/70‑1 (MQ=255) gTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGa > 1:1006149/1‑71 (MQ=255) gTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGa > 1:3450661/1‑71 (MQ=255) gTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGa < 1:20796/71‑1 (MQ=255) tAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCg < 1:789327/53‑1 (MQ=255) tAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCg < 1:2500489/53‑1 (MQ=255) tAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGAt < 1:574741/71‑1 (MQ=255) tAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGAt > 1:875415/1‑71 (MQ=255) tAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGAt > 1:553621/1‑71 (MQ=255) aTGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:1946113/64‑1 (MQ=255) aTGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:181641/64‑1 (MQ=255) aTGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:2705633/64‑1 (MQ=255) aTGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAttt < 1:2835111/64‑1 (MQ=255) tGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGAtgt < 1:1979279/70‑1 (MQ=255) gCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATa > 1:495059/1‑55 (MQ=255) gCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGc > 1:204927/1‑70 (MQ=255) gCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCa < 1:233885/71‑1 (MQ=255) gCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCa < 1:1890687/71‑1 (MQ=255) gCATCGTACTGTTACCCGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGAt > 1:2631549/1‑66 (MQ=255) ATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAtt > 1:3204556‑M1/1‑58 (MQ=255) ATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGAtt > 1:3483334‑M1/1‑58 (MQ=255) | GGGCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGCATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGATGTGCAT > Exported/974116‑974255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |