New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	1163606 =	45 (0.760)	5 (0.090)	3/94	NT	10.9%	coding (401/549 nt)	ynjA	conserved hypothetical protein
	?	Exported	1163628 =	40 (0.740)					coding (423/549 nt)	ynjA	conserved hypothetical protein

TTTTGCAGGCCGATCAATGCCGTCAGTTCGGTGAGCGCCTGAGCGTCAAAATGCGCAGCCAGTCGGGTACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/1163678‑1163606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaTTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTGCAAAATCTGTCAGCCCGTTTT  >  Exported/1163628‑1163694                                                                                                                                              TTTTGCAGGCCGATCAATGCCGTCAGTTCGGTGAGCGCCTGAGCGTCAAAATGCGCAGCCAGTCGGGTACG                                                                       >  1:1608026/1‑71                                                 AAATGCGCAGCCAGTCGGGTACGCATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCC                         <  1:2459406/69‑1                                                  AATGCGCAGCCAGTCGGGTACGCATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCC                         <  1:2606090/68‑1                                                  AATGCGCAGCCAGTCGGGTACGCATTTTGACGCTCAGGCGCTCACCGAACTG                                         <  1:2319545/52‑1                                                  AATGCGCAGCCAGTCGGGTACGCATTTTGACGCTCAGGCGCTCACCGAACTG                                         <  1:2548689/52‑1                                                   ATGCGCAGCCAGTCGGGTACGCATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTG                       >  1:527120/1‑69                                                                       GCATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTGCAAAATCTGTCAGCCCGTTTT  >  1:409150/1‑70                                                                        CATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTGCAAAATCT               <  1:2441447/56‑1                                                                        CATTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTGCAAAATCT               <  1:2856240/56‑1                                                                                                                                              TTTTGCAGGCCGATCAATGCCGTCAGTTCGGTGAGCGCCTGAGCGTCAAAATGCGCAGCCAGTCGGGTACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/1163678‑1163606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaTTTTGACGCTCAGGCGCTCACCGAACTGACGGCATTGATCGGCCTGCAAAATCTGTCAGCCCGTTTT  >  Exported/1163628‑1163694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.