| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1699109 = | 35 (0.590) | 6 (0.100) | 3/100 | NT | 14.6% | coding (989/1281 nt) | csiE | stationary phase inducible protein |
| ? | Exported | 1699134 = | 36 (0.620) | coding (1014/1281 nt) | csiE | stationary phase inducible protein | |||||
ATAATCTGTTTTTCATGCAGATCGTTTTCCTGCATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1699145‑1699109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGAT > Exported/1699134‑1699184 ATAATCTGTTTTTCATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTACCGGGAATGATAGC > 1:3224690/1‑71ATAATCTGTTTTTCATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTACCGGGAATGATAGC > 1:886897/1‑71 TCATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCG > 1:1182170/1‑71 CATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTAC > 1:328828/1‑45 CATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTAC > 1:439960/1‑45 CATGCAGATCGTTTTCCTGCATTAAAAACAGATTATTCTTCTTAC > 1:861952/1‑45 AAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGAT > 1:2580740/1‑52 AAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAG < 1:2450767/42‑1 AAAAACAGATTATTCTTCTTACCGGGAATGATAGCG > 1:2974300/1‑36 ATAATCTGTTTTTCATGCAGATCGTTTTCCTGCATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1699145‑1699109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGAT > Exported/1699134‑1699184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |