| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1699109 = | 35 (0.590) | 6 (0.100) | 3/100 | NT | 14.6% | coding (989/1281 nt) | csiE | stationary phase inducible protein |
| ? | Exported | 1699134 = | 36 (0.620) | coding (1014/1281 nt) | csiE | stationary phase inducible protein | |||||
TGAATACGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAG > Exported/1699044‑1699174 | tGAATACGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGc < 1:2067117/71‑1 (MQ=255) gAATACGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGc < 1:3415887/70‑1 (MQ=255) aCGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCATGGCTAAt > 1:147491/1‑64 (MQ=255) cGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGaa < 1:3048715/70‑1 (MQ=255) cGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGaa < 1:435433/70‑1 (MQ=255) cGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGaa < 1:1817685/70‑1 (MQ=255) cGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGaa < 1:2887729/70‑1 (MQ=255) cATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCt > 1:748240/1‑71 (MQ=255) atctgcgcttctcgctcgctatcattcccggtaagaagaataatctgttttt > 1:2580740‑M1/52‑52 (MQ=255) tCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTg > 1:73631/1‑70 (MQ=255) ttCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCAt > 1:1306027/1‑70 (MQ=255) cgcttctcgctcgctatcattcccggtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATGa > 1:1182170‑M1/47‑71 (MQ=255) atgaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGaaaa > 1:3536359/1‑70 (MQ=255) tgaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGc > 1:806291/1‑62 (MQ=255) tgaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGc > 1:256643/1‑62 (MQ=255) ctcgctcgctatcattcccggtaagaagaataatctgttttt < 1:2450767‑M1/1‑1 (MQ=255) gaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATg < 1:805271/45‑1 (MQ=255) gaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGaaaaa > 1:3698210/1‑69 (MQ=255) ggAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCa > 1:1917993/1‑45 (MQ=255) cgctatcattcccggtaagaagaataatctgttttt > 1:2974300‑M1/36‑36 (MQ=255) gctatcattcccggtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATGAAAAACAGattat > 1:3224690‑M1/35‑71 (MQ=255) gctatcattcccggtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATGAAAAACAGattat > 1:886897‑M1/35‑71 (MQ=255) aGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGattat < 1:3601786/71‑1 (MQ=255) aGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGattat < 1:3388672/71‑1 (MQ=255) ggtctggtcGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTg < 1:3224319/51‑1 (MQ=255) cgcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCg > 1:1141121/1‑71 (MQ=255) gcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCgg < 1:3542635/71‑1 (MQ=255) gcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCgg < 1:2288934/71‑1 (MQ=255) gtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATg > 1:439960‑M1/22‑45 (MQ=255) gtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATg > 1:328828‑M1/22‑45 (MQ=255) gtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATg > 1:861952‑M1/22‑45 (MQ=255) cgGTGATTTTCGGTGCCTGGCTAATGAAGGAAAACGATCTCCATGAAAAACAGATTATTCTTCTTAc > 1:2613009/1‑67 (MQ=255) ggTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGa < 1:1140640/45‑1 (MQ=255) ggTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:986257/71‑1 (MQ=255) ggTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:3097750/71‑1 (MQ=255) gTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGa < 1:3626774/35‑1 (MQ=255) aTTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGa > 1:1268027/1‑71 (MQ=255) ttttCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:2526259/66‑1 (MQ=255) ttttCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:1890227/66‑1 (MQ=255) cGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagc > 1:248055/1‑70 (MQ=255) ggTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcg < 1:1230972/70‑1 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:981675/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:362880/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:977313/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:427489/1‑69 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:1496080/1‑69 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:2398153/1‑68 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag < 1:446867/71‑1 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag < 1:3026909/71‑1 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:1676923/1‑70 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:349315/1‑70 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:3217827/1‑70 (MQ=255) gCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATa > 1:317798/1‑59 (MQ=255) | TGAATACGGCGTCCATCTTTCTGATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAG > Exported/1699044‑1699174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |