New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	= 1812360	37 (0.630)	6 (0.110)	3/96	NT	12.3%	intergenic (‑49/+186)	csrA/alaS	pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase
	?	Exported	= 1812377	51 (0.920)					intergenic (‑66/+169)	csrA/alaS	pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase

AACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/1812288‑1812360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTTATATGATGGATAATGCCGG  <  Exported/1812377‑1812356                                                                                                 AACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCG                          <  1:1490360/71‑1                       ATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCGTTATATGATGGATAATGCC    <  1:2575587/71‑1                                      AAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCGTTATATGATGGATAATGCCGG  <  1:2112515/58‑1                                      AAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCGTTATATGATGGATAATGCCGG  <  1:331902/58‑1                                                      GGGTCTCTCTGTATCCCGGCGTTATATGATGGATA         <  1:196866/35‑1                                                      GGGTCTCTCTGTATCCCGGCGTTATATGATGGATA         <  1:2890669/35‑1                                                         TCTCTCTGTATCCCGGCGTTATATGATGGATAATGCC    <  1:1738180/37‑1                                                                                                 AACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/1812288‑1812360 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTTATATGATGGATAATGCCGG  <  Exported/1812377‑1812356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.