| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1812360 | 37 (0.630) | 6 (0.110) | 3/96 | NT | 12.3% | intergenic (‑49/+186) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase |
| ? | Exported | = 1812377 | 51 (0.920) | intergenic (‑66/+169) | csrA/alaS | pleiotropic regulatory protein for carbon source metabolism/alanyl‑tRNA synthetase | |||||
CTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTAAG > Exported/1812313‑1812447 | cTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaa > 1:2585698/1‑70 (MQ=255)cTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaa < 1:1971814/70‑1 (MQ=255) tttGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaa > 1:1034751/1‑70 (MQ=255) tGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaaaa < 1:1165386/70‑1 (MQ=255) cTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAg > 1:2663544/1‑70 (MQ=255) aaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 1:1039136/70‑1 (MQ=255) aaGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGa > 1:1486205/1‑71 (MQ=255) aTTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGt < 1:2216655/59‑1 (MQ=255) aTTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa > 1:849000/1‑70 (MQ=255) aTTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACa > 1:3734834/1‑70 (MQ=255) ttAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGt < 1:2396443/58‑1 (MQ=255) agagTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACAt < 1:3359091/71‑1 (MQ=255) agagTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACAt < 1:554232/71‑1 (MQ=255) agTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCaaa < 1:1997435/47‑1 (MQ=255) gTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTAc < 1:1696591/71‑1 (MQ=255) gggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACa > 1:2753245/1‑69 (MQ=255) gggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACAt > 1:1794173/1‑70 (MQ=255) gggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATc > 1:282076/1‑71 (MQ=255) ggTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt < 1:527663/71‑1 (MQ=255) tctctcTGTATCCCGGCATTATCCATCATATAACGCCaa < 1:3545156/39‑1 (MQ=255) tctctcTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:1489963/1‑69 (MQ=255) tctGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAg > 1:1304020/1‑71 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:3291087/37‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:3183358/37‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:264606/37‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAg < 1:78174/37‑1 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt > 1:139980/1‑70 (MQ=255) tGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt > 1:644582/1‑70 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACAt < 1:2481080/54‑1 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGt < 1:1068357/68‑1 (MQ=255) tATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCAt > 1:2626314/1‑71 (MQ=255) ccGGCATTATCCATCATATAACgccgggatacagagagacccgactcttttaatcttt < 1:331902‑M2/58‑37 (MQ=255) ccGGCATTATCCATCATATAACgccgggatacagagagacccgactcttttaatcttt < 1:2112515‑M2/58‑37 (MQ=255) ccGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATg < 1:2452187/40‑1 (MQ=255) ccGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACaaa < 1:3328818/45‑1 (MQ=255) ggCATTATCCATCATATAACgccgggatacagagagacccgactcttttaatctttcaaggagcaaagaat < 1:2575587‑M2/71‑52 (MQ=255) ggCATTATCCATCATATAACgccgggatacagagaga < 1:1738180‑M2/37‑18 (MQ=255) ggCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAtt < 1:695799/71‑1 (MQ=255) ggCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAt > 1:14447/1‑70 (MQ=255) gCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAtt > 1:1056606/1‑70 (MQ=255) gCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTa > 1:424762/1‑71 (MQ=255) cATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCAtt > 1:505796/1‑69 (MQ=255) cATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTa > 1:2193314/1‑70 (MQ=255) ttATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTActt > 1:3669660/1‑69 (MQ=255) ttATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACAt > 1:520280/1‑71 (MQ=255) tATCCATCATATAACgccgggatacagagagaccc < 1:2890669‑M2/35‑21 (MQ=255) tATCCATCATATAACgccgggatacagagagaccc < 1:196866‑M2/35‑21 (MQ=255) aTCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTaa > 1:690250/1‑51 (MQ=255) aTCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTaa > 1:2472614/1‑51 (MQ=255) aTCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTaa > 1:461288/1‑51 (MQ=255) tCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCt < 1:634665/71‑1 (MQ=255) ccATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTg > 1:1696520/1‑71 (MQ=255) ccATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTg > 1:1953395/1‑71 (MQ=255) ccATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTg > 1:125675/1‑71 (MQ=255) ccATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTg > 1:2338148/1‑71 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGtt > 1:900757/1‑70 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGtt > 1:1264350/1‑70 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGtt > 1:358179/1‑70 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGtt > 1:3185044/1‑70 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTa < 1:639588/71‑1 (MQ=255) tcatATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTa < 1:2410127/71‑1 (MQ=255) atatAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATg > 1:3384443/1‑53 (MQ=255) atatAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTaaa > 1:2035911/1‑71 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:3378556/1‑39 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:2931569/1‑39 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:2329536/1‑39 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:2469178/1‑39 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCt > 1:2578649/1‑39 (MQ=255) taACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACAtt < 1:2826575/60‑1 (MQ=255) aCGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCt > 1:2865528/1‑69 (MQ=255) cGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTAAg > 1:3720463/1‑71 (MQ=255) | CTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTATCCATCATATAACGCCAAAAAGTAAGCAATGACAAACACATTACATCTAAGCAGTCATGGCATTACATTCTGTTAAACCTAAG > Exported/1812313‑1812447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |