| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2065275 | 61 (1.030) | 5 (0.090) | 3/92 | NT | 8.5% | coding (1516/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | Exported | = 2065303 | 53 (1.000) | coding (1544/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
AAGAACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2065201‑2065275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatctTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCTT < Exported/2065303‑2065236 AAGAACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCA < 1:2831145/71‑1 ACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCT < 1:1557973/71‑1 GACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTTCATCATCACCGATCGGCGTTTCCAT < 1:869824/69‑1 GACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTTCATCATCACCGATCGGCGTTTCCAT < 1:1547556/69‑1 AAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCA < 1:285678/36‑1 AAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCA < 1:1462168/36‑1 AAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCA < 1:1994397/36‑1 CTGAAGATCGCCAAAGAGCCAATCTTCATCATCACCGATCGGCGTTTCCATGG < 1:2742345/53‑1 CTGAAGATCGCCAAAGAGCCAATCTTCATCATCACCGATCGGCGTTTCCATGG < 1:244658/53‑1 CTGAAGATCGCCAAAGAGCCAATCTTCATCATCACCGATCGGCGTTT < 1:2192806/47‑1 ATCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCT > 1:1429865/1‑71 ATCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCT < 1:291036/71‑1 ATCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATC > 1:2547769/1‑52 ATCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATC > 1:1518034/1‑52 ATCTTCATCATCACAGATCGGCGTTTCCATGGAGAT > 1:2630397/1‑36 TCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCTT > 1:1163162/1‑71 TCTTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCT > 1:2824666/1‑70 TTCATCATCCCCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCG > 1:1021065/1‑46 TTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCG > 1:2158555/1‑46 TTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCG > 1:1111858/1‑46 TTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGG > 1:3259405/1‑44 AAGAACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2065201‑2065275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatctTCATCATCACCGATCGGCGTTTCCATGGAGATTGGCTCTTTGGCGATCTTCAGCACTTTGCGGATCTT < Exported/2065303‑2065236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |