| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2065275 | 61 (1.030) | 5 (0.090) | 3/92 | NT | 8.5% | coding (1516/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | Exported | = 2065303 | 53 (1.000) | coding (1544/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
Only 100 of 102 total aligned reads displayed.
ACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTC > Exported/2065205‑2065343 | aCTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCT < 1:1557973‑M1/71‑1 (MQ=255) tGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATg > 1:861445/1‑70 (MQ=255) aaCGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGa > 1:2389079/1‑70 (MQ=255) aaCGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGa > 1:2803671/1‑70 (MQ=255) aCGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGaaa > 1:181674/1‑71 (MQ=255) gTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACg < 1:201244/71‑1 (MQ=255) tGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGcc > 1:2875088/1‑70 (MQ=255) tGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCg < 1:2053790/71‑1 (MQ=255) tGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCg < 1:2943987/71‑1 (MQ=255) gCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGa > 1:979574/1‑71 (MQ=255) cTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGAt < 1:782727/71‑1 (MQ=255) aTGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCgg < 1:2918728/71‑1 (MQ=255) gCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGt > 1:1954076/1‑70 (MQ=255) ccGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTcc > 1:2872116/1‑51 (MQ=255) ggAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGa < 1:1963491/54‑1 (MQ=255) ggAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgat > 1:1843620/1‑70 (MQ=255) gAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGa < 1:3436792/53‑1 (MQ=255) gAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatga > 1:3071757/1‑71 (MQ=255) gAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGACGATCGGtgatga > 1:2344068/1‑71 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGaaa > 1:304971/1‑54 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:2788286/1‑71 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:191045/1‑71 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:3728875/1‑71 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:2013422/1‑71 (MQ=255) aaGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:1269118/1‑71 (MQ=255) aGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatg < 1:1534096/71‑1 (MQ=255) aGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatg < 1:1926824/71‑1 (MQ=255) aGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgat > 1:1643250/1‑70 (MQ=255) gACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTtcatcatcaccgatcggcgtttccat < 1:1547556‑M1/69‑27 (MQ=255) gACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTtcatcatcaccgatcggcgtttccat < 1:869824‑M1/69‑27 (MQ=255) gACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatga < 1:2152477/71‑1 (MQ=255) aaGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatg > 1:2409228/1‑67 (MQ=255) aaGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatg > 1:2418454/1‑67 (MQ=255) aaGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatg > 1:1078607/1‑67 (MQ=255) aaGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAaga > 1:1163162‑M2/1‑68 (MQ=255) aGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAagat > 1:1429865‑M2/1‑67 (MQ=255) aGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAagat < 1:291036‑M2/71‑5 (MQ=255) aGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAaga > 1:2824666‑M2/1‑67 (MQ=255) ccGCAAAGTGCTGAAGATCGCCAAAGCGCCAATCTcc > 1:525235/1‑37 (MQ=255) ccGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtg > 1:3674424/1‑56 (MQ=255) cGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatta < 1:2939693/62‑3 (MQ=255) cGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatga < 1:1709767/62‑1 (MQ=255) cGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGtgatgatga < 1:3338207/62‑1 (MQ=255) gCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCAt < 1:148976/71‑1 (MQ=255) gTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCg > 1:38447/1‑42 (MQ=255) cTGAAGATCGCCAAAGAGCCAATCTtcatcatcaccgatcggcgtttccatgg < 1:2742345‑M1/53‑29 (MQ=255) cTGAAGATCGCCAAAGAGCCAATCTtcatcatcaccgatcggcgtttccatgg < 1:244658‑M1/53‑29 (MQ=255) cTGAAGATCGCCAAAGAGCCAATCTtcatcatcaccgatcggcgttt < 1:2192806‑M1/47‑23 (MQ=255) gAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCg < 1:3525272/37‑1 (MQ=255) gAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCg < 1:2938784/37‑1 (MQ=255) gAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGAtt > 1:3591173/1‑71 (MQ=255) gAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGAtt > 1:2530166/1‑71 (MQ=255) aaGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTTATGATGAAGATTCGCATCTGGGGGAttt < 1:2330233/71‑1 (MQ=255) aaGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGAtt < 1:2033122/70‑1 (MQ=255) aGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGAttt < 1:704213/70‑1 (MQ=255) gATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAagat > 1:2547769‑M2/1‑48 (MQ=255) gATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAagat > 1:1518034‑M2/1‑48 (MQ=255) tCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATc < 1:1575745/71‑1 (MQ=255) tCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATc < 1:213147/71‑1 (MQ=255) cGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAa > 1:1111858‑M2/1‑45 (MQ=255) cGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAa > 1:2158555‑M2/1‑45 (MQ=255) cGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGGGATGATGAa > 1:1021065‑M2/1‑45 (MQ=255) gCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCt < 1:3018340/56‑1 (MQ=255) gCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCg < 1:2069367/70‑1 (MQ=255) ccAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAa > 1:3259405‑M2/1‑43 (MQ=255) ccAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATc > 1:3295463/1‑68 (MQ=255) cAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTgg < 1:216166/56‑1 (MQ=255) aaaGAGCCAATCTGCATTGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCg < 1:3265636/67‑1 (MQ=255) aaaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCg < 1:211237/67‑1 (MQ=255) aaaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGa < 1:1850868/71‑1 (MQ=255) aaaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGa > 1:3697791/1‑71 (MQ=255) aaaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGa < 1:633999/71‑1 (MQ=255) aaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATc < 1:1322374/51‑1 (MQ=255) aaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTgg < 1:1594847/54‑1 (MQ=255) aaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGAt < 1:1473900/71‑1 (MQ=255) aaGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGAt < 1:1331842/71‑1 (MQ=255) cAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTc < 1:654695/40‑1 (MQ=255) cAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTc < 1:1104883/40‑1 (MQ=255) aaTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGc < 1:1268121/41‑1 (MQ=255) aaTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGc < 1:794435/41‑1 (MQ=255) aaTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGc < 1:1524051/41‑1 (MQ=255) aaTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGTATACCAccc < 1:2356846/71‑1 (MQ=255) aaTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCAccc > 1:197573/1‑71 (MQ=255) aTCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatcttcagcactttgcggatct > 1:1429865‑M1/1‑4 (MQ=255) aTCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatcttcagcactttgcggatct < 1:291036‑M1/71‑68 (MQ=255) aTCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatc > 1:1518034‑M1/1‑4 (MQ=255) aTCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatc > 1:2547769‑M1/1‑4 (MQ=255) aTCTtcatcatcacagatcggcgtttccatggagat > 1:2630397‑M1/1‑4 (MQ=255) aTCTCCATGGAAACGCCGATCTGTGATGATGAagat > 1:2630397‑M2/1‑32 (MQ=255) aTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATc > 1:2938539/1‑43 (MQ=255) aTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATc > 1:2982612/1‑43 (MQ=255) tCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatcttcagcactttgcggatctt > 1:1163162‑M1/1‑3 (MQ=255) tCTtcatcatcaccgatcggcgtttccatggagattggctctttggcgatcttcagcactttgcggatct > 1:2824666‑M1/1‑3 (MQ=255) ttcatcatccccgatcggcgtttccatggagattggctctttggcg > 1:1021065‑M1/1‑1 (MQ=255) ttcatcatcaccgatcggcgtttccatggagattggctctttggcg > 1:2158555‑M1/1‑1 (MQ=255) ttcatcatcaccgatcggcgtttccatggagattggctctttggcg > 1:1111858‑M1/1‑1 (MQ=255) ttcatcatcaccgatcggcgtttccatggagattggctctttgg > 1:3259405‑M1/1‑1 (MQ=255) tcCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTg > 1:3108422/1‑42 (MQ=255) tcCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTg > 1:3308549/1‑42 (MQ=255) tcCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTg > 1:3518562/1‑42 (MQ=255) | ACTGGCTGAACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTC > Exported/2065205‑2065343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |