| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2258821 | 72 (1.220) | 11 (0.200) | 3/96 | NT | 13.9% | coding (2322/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | Exported | = 2258846 | 68 (1.220) | coding (2297/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
CTGACCAAGCGCCAGTTCACCGAGGTCGGTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2258749‑2258821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCAC < Exported/2258846‑2258777 CTGACCAAGCGCCAGTTCACCGAGGTCGGTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTT > 1:1602477/1‑71 GACCAAGCGCCAGTTCACCGAGGTCGGTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCA > 1:1270293/1‑71 AGGTCGGTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCA > 1:1475671/1‑51 GCCAGCACGTCGCCACGTTCAACCGGTTCAACCAGATTCCGTGTGTGTCTCT < 1:341244/52‑1 GCCAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCT < 1:2564241/52‑1 CCAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCT < 1:2090040/51‑1 CAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:858363/1‑52 CAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:1231590/1‑52 CAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:3176527/1‑52 CAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:3018744/1‑52 CAGCACGTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:2118810/1‑52 GTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:1112275/1‑46 GTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:1934491/1‑46 GTCGCCACGTTCAACCGGTTCAACCAGATGCCGTGTGTGTCTCTGG > 1:1022321/1‑46 TCAACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAACGTGGCGACGT < 1:1688314/52‑1 TCAACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAACGTG > 1:3090995/1‑45 AACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCAC > 1:2058677/1‑71 CTGACCAAGCGCCAGTTCACCGAGGTCGGTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/2258749‑2258821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAACGTGGCGACGTGCTGGCAGACGGTCCGTCCAC < Exported/2258846‑2258777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |