New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 225882172 (1.220)11 (0.200) 3/96 NT 13.9% coding (2322/4029 nt) rpoB RNA polymerase, beta subunit
?Exported = 2258846 68 (1.220)coding (2297/4029 nt) rpoB RNA polymerase, beta subunit

GTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGG  >  Exported/2258777‑2258916
                                                                     |                                                                      
gTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTt                                                                       >  1:2058677‑M2/1‑70 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:1866734/71‑1 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:3579333/71‑1 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:1673591/71‑1 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:3560689/71‑1 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:1460069/71‑1 (MQ=255)
     cggacCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  <  1:5079/71‑1 (MQ=255)
         ccGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  >  1:3662023/1‑67 (MQ=255)
         ccGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  >  1:677098/1‑67 (MQ=255)
         ccGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  >  1:437326/1‑67 (MQ=255)
         ccGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGgt                                                              >  1:2479463/1‑71 (MQ=255)
          cGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGgtg                                                             <  1:1894648/71‑1 (MQ=255)
          cGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGgtg                                                             <  1:2659801/71‑1 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTgg                                                       <  1:2725930/71‑1 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTg                                                        <  1:2776344/70‑1 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTg                                                        <  1:68364/70‑1 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTg                                                        <  1:1532947/70‑1 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTg                                                        >  1:1100887/1‑70 (MQ=255)
                ccAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTg                                                        <  1:1816884/70‑1 (MQ=255)
                  aGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGt                                                      >  1:816069/1‑70 (MQ=255)
                   gCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGt                                                      >  1:3524371/1‑69 (MQ=255)
                    cACGTCGACACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCt                                                         >  1:2412187/1‑65 (MQ=255)
                     aCGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTtga                                                                     <  1:1688314‑M2/52‑4 (MQ=255)
                     aCGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGa                                                  <  1:3680256/71‑1 (MQ=255)
                     aCGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGa                                                  <  1:694063/71‑1 (MQ=255)
                      cGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAg                                                                <  1:623345/56‑1 (MQ=255)
                      cGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGaa                                                 <  1:2921532/71‑1 (MQ=255)
                       gTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAAc                                                <  1:1492458/71‑1 (MQ=255)
                       gTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAAc                                                >  1:1370427/1‑71 (MQ=255)
                        tCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACg                                               <  1:2320480/71‑1 (MQ=255)
                          gCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACggg                                             >  1:2399875/1‑71 (MQ=255)
                          gCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACggg                                             >  1:69835/1‑71 (MQ=255)
                          gCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACgg                                              <  1:3235682/70‑1 (MQ=255)
                            cACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTtga                                                                     >  1:3090995‑M2/1‑42 (MQ=255)
                             aCGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATAc                                                                  >  1:369679/1‑47 (MQ=255)
                             aCGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACggg                                             >  1:1028029/1‑68 (MQ=255)
                             aCGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACggg                                             >  1:3147539/1‑68 (MQ=255)
                              cGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTa                                         <  1:2094315/71‑1 (MQ=255)
                              cGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTa                                         >  1:1814448/1‑71 (MQ=255)
                              cGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGAGTa                                         <  1:1622366/71‑1 (MQ=255)
                                  cAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGt                                                      >  1:3592778/1‑54 (MQ=255)
                                  cAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGt                                                      >  1:1426386/1‑54 (MQ=255)
                                  cAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGt                                                      >  1:394528/1‑54 (MQ=255)
                                    aCCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGt                                   >  1:2286210/1‑71 (MQ=255)
                                     ccGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGt                                   >  1:2353068/1‑70 (MQ=255)
                                      cGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTAt                                        >  1:2112828/1‑64 (MQ=255)
                                       ggTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGa                                                  >  1:850992/1‑53 (MQ=255)
                                         ttCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGt                              <  1:1297915/71‑1 (MQ=255)
                                         ttCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGt                              <  1:3104765/71‑1 (MQ=255)
                                          tCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGtt                             >  1:1388545/1‑71 (MQ=255)
                                             cccAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTa                          <  1:1683873/71‑1 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctg                                            >  1:858363‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctg                                            >  1:2118810‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctg                                            >  1:3018744‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctg                                            >  1:1231590‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctg                                            >  1:3176527‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgac                                                  >  1:1022321‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgac                                                  >  1:1934491‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTtgaaccggttgaacgtggcgac                                                  >  1:1112275‑M2/1‑24 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGt                                   <  1:2960629/61‑1 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTg                            >  1:562381/1‑68 (MQ=255)
                                              ccAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAg                         <  1:3711078/71‑1 (MQ=255)
                                               cAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTa                                         <  1:1104920/54‑1 (MQ=255)
                                                agagACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctggc                                          <  1:2564241‑M2/52‑31 (MQ=255)
                                                agagACACACACGGCATCTGGTtgaaccggttgaacgtggcgacgtgctgg                                           <  1:2090040‑M2/51‑30 (MQ=255)
                                                agagACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGAt                       >  1:3157255/1‑71 (MQ=255)
                                                agagACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGAt                       <  1:3626356/71‑1 (MQ=255)
                                                agagACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGAt                       <  1:723220/71‑1 (MQ=255)
                                                agagACACACACGGAATCTGGTtgaaccggttgaacgtggcgacgtgctggc                                          <  1:341244‑M2/52‑31 (MQ=255)
                                                     cacacacGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGa                  <  1:282503/71‑1 (MQ=255)
                                                       cacacGGCATCTGGTTTATACAGTTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTTTAGATGTCGa                  <  1:3565284/69‑1 (MQ=255)
                                                       cacacGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATa                <  1:2078098/71‑1 (MQ=255)
                                                        acacGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGgtgt                                          <  1:3442796/44‑1 (MQ=255)
                                                        acacGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTa                          <  1:3691789/60‑1 (MQ=255)
                                                        acacGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTa                          <  1:1995032/60‑1 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCa                                 <  1:3686806/51‑1 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCa                                 <  1:270466/51‑1 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGa                        <  1:3345096/60‑1 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGa                  >  1:3243577/1‑66 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGa                  >  1:948239/1‑66 (MQ=255)
                                                          acGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGa                  >  1:466438/1‑66 (MQ=255)
                                                           cGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGa                        <  1:2380257/59‑1 (MQ=255)
                                                            ggCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAgg                               >  1:36216/1‑51 (MQ=255)
                                                            ggCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAgg                               >  1:32847/1‑51 (MQ=255)
                                                            ggCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGc           >  1:3067886/1‑71 (MQ=255)
                                                              cATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAg                         <  1:2276291/55‑1 (MQ=255)
                                                              cATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAg                         <  1:887372/55‑1 (MQ=255)
                                                              cATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATa                <  1:997181/64‑1 (MQ=255)
                                                                tCTGGTTGATACAGGTTTTCTGGTTAGAACGGGTGTATTTGGTc                                  >  1:204319/1‑44 (MQ=255)
                                                                tCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTc                                  >  1:1875530/1‑44 (MQ=255)
                                                                tCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTc                                  >  1:2549846/1‑44 (MQ=255)
                                                                tCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTc                                  >  1:246422/1‑44 (MQ=255)
                                                                tCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTg                            <  1:2952402/50‑1 (MQ=255)
                                                                 cTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAgg                               >  1:1306522/1‑46 (MQ=255)
                                                                 cTGGATGATACAGGTGTTCTGGTTAGAACGGCTGTATTTGGTCAgg                               >  1:317399/1‑46 (MQ=255)
                                                                    gTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg   >  1:3428362/1‑71 (MQ=255)
                                                                    gTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg   <  1:3247858/71‑1 (MQ=255)
                                                                    gTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg   <  1:3008118/71‑1 (MQ=255)
                                                                    gTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCg   <  1:2341169/71‑1 (MQ=255)
                                                                     ttGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCgg  <  1:2663582/71‑1 (MQ=255)
                                                                     |                                                                      
GTGGACGGACCGTCTGCCAGCACGTCGCCACGTTCAACCGGTTCACCCAGAGACACACACGGCATCTGGTTGATACAGGTGTTCTGGTTAGAACGGGTGTATTTGGTCAGGTTGTAGATGTCGATACCTGCTTCACCCGG  >  Exported/2258777‑2258916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.