| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2684302 = | 58 (0.980) | 7 (0.130) | 3/90 | NT | 13.2% | intergenic (‑18/‑210) | greB/ompR | transcription elongation factor/DNA‑binding response regulator in two‑component regulatory system with EnvZ |
| ? | Exported | 2684350 = | 41 (0.790) | intergenic (‑66/‑162) | greB/ompR | transcription elongation factor/DNA‑binding response regulator in two‑component regulatory system with EnvZ | |||||
ACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2684377‑2684302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagaATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTAG > Exported/2684350‑2684417 ACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAA < 1:2701873/71‑1 AATTTATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAA > 1:125085/1‑70 TTTATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAG < 1:2222488/71‑1 TATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA > 1:2650461/1‑70 TATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA > 1:3597539/1‑70 TATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA > 1:3435555/1‑70 TATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA > 1:173536/1‑70 GATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAA > 1:3593456/1‑47 TGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTG > 1:2115338/1‑70 TGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTG > 1:2867466/1‑70 TGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTG > 1:2959040/1‑70 TGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTG > 1:313168/1‑70 TGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTG > 1:430433/1‑70 TATGATCACGTTATACCCAATGTGCGCATTATCAA < 1:1792152/35‑1 ATCACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTGTATACTTA < 1:1786791/71‑1 CACGTTATACCCAATGTGCGCATTATCAAACAGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAG > 1:3663686/1‑71 AACAGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATT < 1:3397163/71‑1 ACAGAATCAATAATGTTTCGCCGAATAAATTGTAT < 1:1206953/35‑1 CAGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTA < 1:1000079/71‑1 AGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTAG > 1:1942228/1‑71 AGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTAG > 1:78053/1‑71 ACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGATCACGTTATACCCAATGTGCGCATTATCAAACAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2684377‑2684302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagaATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTAG > Exported/2684350‑2684417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |