| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 49 (0.830) | 12 (0.200) | 8/102 | NT | 17.4% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 65 (1.100) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGA > Exported/436765‑436902 | aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa < 1:990297/70‑1 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc < 1:2968487/71‑1 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc > 1:980914/1‑71 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:3124990/1‑68 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:2182841/1‑71 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:3327299/1‑71 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaa > 1:117940‑M1/1‑62 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaa < 1:3286161‑M1/71‑10 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGc < 1:1521600/70‑1 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:2168440/71‑1 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:3127308/71‑1 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:778143/1‑70 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaa < 1:2906665/71‑1 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:757680/1‑70 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca < 1:2285781/70‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgac > 1:3521625/1‑68 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagga > 1:2538240/1‑71 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagga < 1:2323338/71‑1 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:1707477/56‑1 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:98151/56‑1 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGc < 1:2351869/60‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:65971/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:2023282/71‑1 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa > 1:1748591/1‑58 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagga < 1:1022203/64‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagga < 1:3588510/64‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaa < 1:3300282/60‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa < 1:3023039/71‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa < 1:3591842/70‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:829934‑M1/1‑44 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:2909639‑M1/1‑44 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCCAt < 1:1592855/71‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt < 1:1568747/71‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt < 1:1807451/71‑1 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa < 1:849022/68‑1 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:2828766/1‑71 (MQ=255) ttCCC‑GCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:3045037/1‑70 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:1819215/1‑69 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc > 1:511822/1‑70 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa > 1:2216480/1‑71 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:2123234‑M1/70‑32 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCaa > 1:2175063/1‑70 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAAGGCAAt < 1:5346/71‑1 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATcc < 1:1898300/71‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt > 1:2949643/1‑71 (MQ=255) tgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:1880140‑M1/44‑16 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:680014/70‑1 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:2612799/70‑1 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt > 1:3403049/1‑71 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:625403/71‑1 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGc < 1:1533218/71‑1 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:2695385/70‑1 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:1314855/70‑1 (MQ=255) agaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:1395085/1‑71 (MQ=255) aaGGTTTGCGGAACTATATAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg > 1:596839/1‑68 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccat < 1:1930359‑M1/71‑52 (MQ=255) aGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:2267783/71‑1 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:3230188‑M1/1‑19 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:2458371‑M1/1‑19 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:2490745‑M1/1‑19 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc > 1:1094639‑M1/1‑19 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:2481548/1‑42 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac > 1:2714593/1‑50 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac > 1:198819/1‑50 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:273079/1‑71 (MQ=255) aCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa < 1:2599297/70‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca < 1:3011109/71‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:2352276/1‑69 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:3078692‑M1/56‑51 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACagag > 1:419442/1‑71 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACagag > 1:3574168/1‑71 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACagag > 1:2793438/1‑71 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGt > 1:1102417/1‑69 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:1057299‑M1/70‑70 (MQ=255) | ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGA > Exported/436765‑436902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |