| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 49 (0.830) | 12 (0.200) | 8/102 | NT | 17.4% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 65 (1.100) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
TTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT > Exported/1803837‑1803975 | ttATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:1216114/1‑71 (MQ=255)ttATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:1653315/1‑71 (MQ=255) aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:1487506/70‑1 (MQ=255) aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:2727924/70‑1 (MQ=255) aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:2561539/70‑1 (MQ=255) aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:1903834/70‑1 (MQ=255) cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:3647535/1‑63 (MQ=255) cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:699542/1‑63 (MQ=255) cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:130477/1‑63 (MQ=255) acatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGaaa > 1:117940‑M2/63‑71 (MQ=255) acatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGaaa < 1:3286161‑M2/9‑1 (MQ=255) ccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTCTATCGGCTGAAAt < 1:2049941/71‑1 (MQ=255) ccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAt < 1:3316306/71‑1 (MQ=255) ccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAt > 1:3186065/1‑71 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt > 1:3516261/1‑70 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTa < 1:3339030/71‑1 (MQ=255) caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:3077985/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:2504462/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:3047361/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:956796/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:352865/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:419976/1‑71 (MQ=255) aaGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAAt > 1:1070286/1‑71 (MQ=255) aTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAgg < 1:268232/71‑1 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:3048332/1‑59 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:2615722/1‑59 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:2210332/1‑59 (MQ=255) tttttCTAAAACAATACATTTACTTTATTTGTCACTGTCCTTACTATATCGGCTGAAATTAATGAGGTCa > 1:1715025/1‑70 (MQ=255) ttttCTAAAAGAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:1586892/1‑61 (MQ=255) ttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATc > 1:103708/1‑49 (MQ=255) ttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:2750678/1‑61 (MQ=255) ttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:1343846/1‑61 (MQ=255) tttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:249317/1‑56 (MQ=255) tttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:922767/1‑56 (MQ=255) tttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGaaa > 1:2120609/1‑56 (MQ=255) ttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTc > 1:2495390/1‑66 (MQ=255) ttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTc > 1:1824460/1‑66 (MQ=255) cTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATAccc < 1:1075612/70‑1 (MQ=255) aattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:829934‑M2/45‑70 (MQ=255) aattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:2909639‑M2/45‑70 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCaaa < 1:708748/70‑1 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCaa < 1:376866/69‑1 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCa < 1:3143723/68‑1 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCa < 1:2560664/68‑1 (MQ=255) aaaCAATACATATACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCaa < 1:14264/69‑1 (MQ=255) aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:757531/71‑1 (MQ=255) aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg > 1:2217503/1‑71 (MQ=255) aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:1646802/71‑1 (MQ=255) aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGGCATACCCAAATg < 1:1753624/71‑1 (MQ=255) ccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:2123234‑M2/31‑1 (MQ=255) cAATACATTTACTTTATTTGTCACTGTCGTTACTATATCgg > 1:1323212/1‑41 (MQ=255) cAATACATTTACTTTATTTGTCACTGTCGTTACTATATCgg > 1:3632020/1‑41 (MQ=255) tACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATg < 1:1368957/50‑1 (MQ=255) tACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATg < 1:227659/50‑1 (MQ=255) aCATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGt > 1:3526356/1‑71 (MQ=255) cATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGtt > 1:880532/1‑71 (MQ=255) tttACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg > 1:1274472/1‑71 (MQ=255) tttACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg > 1:1811254/1‑71 (MQ=255) tttACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg > 1:146873/1‑71 (MQ=255) tgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATg < 1:1880140‑M2/15‑1 (MQ=255) tACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt > 1:1152428/1‑71 (MQ=255) cTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCAt < 1:3128063/49‑1 (MQ=255) cTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:3231491/69‑1 (MQ=255) tATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAc < 1:1132716/69‑1 (MQ=255) aTTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAc < 1:3252772/68‑1 (MQ=255) aggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAt < 1:1930359‑M2/51‑1 (MQ=255) ggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:2490745‑M2/20‑45 (MQ=255) ggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:2458371‑M2/20‑45 (MQ=255) ggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:1094639‑M2/20‑45 (MQ=255) ggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATAccc > 1:3230188‑M2/20‑45 (MQ=255) tCACTGTCGTTACTATATCGGCTGAAATTAATGAgg < 1:272539/36‑1 (MQ=255) tCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAtt < 1:1774268/70‑1 (MQ=255) cTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGttt > 1:651732/1‑58 (MQ=255) cTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGttt > 1:3173323/1‑58 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATgg < 1:344095/44‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATgg < 1:1833339/44‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaaa > 1:2676137/1‑71 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:106588/1‑60 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:1040065/1‑60 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:837542/1‑60 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:1514983/1‑60 (MQ=255) gTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa > 1:2794533/1‑60 (MQ=255) ttACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:677884/40‑1 (MQ=255) ttACTATATCGGCTGAAATTAATGAGGTCATACCCAAATg < 1:1741987/40‑1 (MQ=255) atctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa < 1:3078692‑M2/50‑1 (MQ=255) tatCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaaa < 1:1541459/69‑1 (MQ=255) atCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaa > 1:2384660/1‑60 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGttt > 1:2370736/1‑44 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa > 1:565257/1‑45 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa > 1:1300752/1‑45 (MQ=255) tCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAtt < 1:2835849/70‑1 (MQ=255) aCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAtt < 1:1057299‑M2/69‑1 (MQ=255) | TTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT > Exported/1803837‑1803975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |