| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 428834 = | 71 (1.200) | 5 (0.090) | 3/92 | NT | 7.6% | coding (1590/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| ? | Exported | 428867 = | 57 (1.070) | coding (1623/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components | |||||
AAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCG > Exported/428797‑428936 | aaGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCa < 1:365786/71‑1 (MQ=255) aGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAg > 1:965929/1‑71 (MQ=255) aGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAg > 1:3184166/1‑71 (MQ=255) ttCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCg > 1:1655459/1‑70 (MQ=255) gCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAgg > 1:2662408/1‑71 (MQ=255) cAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:388417/70‑1 (MQ=255) aGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGa > 1:1899330/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:3099934/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:1749360/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:2823990/1‑70 (MQ=255) cAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa > 1:2142536/1‑71 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:3262510/1‑71 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:2072445/1‑71 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:1559166/1‑71 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:753097/65‑1 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:1171789/65‑1 (MQ=255) gCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGt < 1:1395494/71‑1 (MQ=255) gCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGt < 1:3240987/71‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa < 1:3584014/64‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa < 1:1046892/64‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGa > 1:3642107/1‑70 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGa > 1:1778095/1‑70 (MQ=255) tgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGaaa < 1:3578066/71‑1 (MQ=255) gggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGa > 1:1108258/1‑59 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt < 1:3718383/71‑1 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt > 1:3257971/1‑71 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt < 1:3222461/71‑1 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCtt > 1:490666/1‑70 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:883550/71‑1 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:95572/71‑1 (MQ=255) cGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc > 1:3022844/1‑70 (MQ=255) cGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCa < 1:3482786/71‑1 (MQ=255) ggTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCaa > 1:37261/1‑71 (MQ=255) gtgtGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:2013605/68‑1 (MQ=255) tgGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACacc < 1:2994817/71‑1 (MQ=255) tgGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACacc < 1:1281281/71‑1 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:572717/1‑67 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:144696/1‑67 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:568308/1‑67 (MQ=255) cGGTAAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaac > 1:2428337/1‑71 (MQ=255) ggtgatacgacgattttatctgtcggtttcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaac > 1:1722688‑M2/34‑70 (MQ=255) ggtgatacgacgattttatctgtcggtttcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaac > 1:3053189‑M2/34‑70 (MQ=255) GGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaacc > 1:3217018‑M1/1‑71 (MQ=255) GGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaacc > 1:2729426‑M1/1‑71 (MQ=255) GTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg > 1:3118838‑M1/1‑42 (MQ=255) GTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCtt < 1:2459764‑M1/59‑1 (MQ=255) tgatacgacgattttatctgtcggtttcaccAGCCGCAGGGACAATCGTGAAAAt < 1:409330‑M2/24‑1 (MQ=255) TGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATc > 1:1110854‑M1/1‑56 (MQ=255) AAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGaaa < 1:1054486‑M1/51‑1 (MQ=255) AAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCAcgc < 1:2525900‑M1/71‑1 (MQ=255) AAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCAcgc < 1:12692‑M1/71‑1 (MQ=255) AAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCAcgc < 1:1511898‑M1/71‑1 (MQ=255) aCCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGt > 1:2990518/1‑71 (MQ=255) cgacgattttatctgtcggtttcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGtt < 1:2681112‑M2/45‑1 (MQ=255) cgacgattttatctgtcggtttcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGtt < 1:1816638‑M2/45‑1 (MQ=255) cGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:2946216/35‑1 (MQ=255) aCAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTg < 1:2192560/71‑1 (MQ=255) cAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt > 1:967153/1‑48 (MQ=255) cAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt > 1:1787167/1‑48 (MQ=255) cAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt > 1:2464763/1‑48 (MQ=255) aTAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTg < 1:1665005/71‑1 (MQ=255) tAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCaa > 1:1024909/1‑48 (MQ=255) tAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAac > 1:2815573/1‑49 (MQ=255) tAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACacc < 1:3497516/52‑1 (MQ=255) tAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTgg < 1:1443142/71‑1 (MQ=255) tAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTg < 1:819117/70‑1 (MQ=255) aaaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTgg < 1:2897971/70‑1 (MQ=255) aaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATc < 1:951073/41‑1 (MQ=255) aaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATc < 1:3048425/41‑1 (MQ=255) aaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGa < 1:3251698/70‑1 (MQ=255) aaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGa > 1:106735/1‑70 (MQ=255) aaaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGa < 1:1354584/70‑1 (MQ=255) aTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAAc < 1:132713/71‑1 (MQ=255) aTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAAc < 1:1653020/71‑1 (MQ=255) gtcgtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCg < 1:2146249/70‑1 (MQ=255) tcgtATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:3421529/38‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaaa < 1:1143859/71‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaaa < 1:2865694/71‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaaa < 1:3178421/71‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa > 1:963790/1‑70 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa < 1:933522/70‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa < 1:3140786/70‑1 (MQ=255) gtATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa < 1:2060032/70‑1 (MQ=255) tATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa > 1:1736416/1‑69 (MQ=255) tATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGaaa > 1:3052498/1‑69 (MQ=255) aTCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAg > 1:32811/1‑71 (MQ=255) tcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGaa < 1:3647348‑M2/55‑1 (MQ=255) tcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGaa < 1:2156230‑M2/55‑1 (MQ=255) tcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAgg < 1:3119083‑M2/66‑1 (MQ=255) accAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGgc < 1:3397873‑M2/67‑1 (MQ=255) ccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGt < 1:410634‑M2/44‑1 (MQ=255) ccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGt < 1:3652777‑M2/44‑1 (MQ=255) ccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGt < 1:2237260‑M2/44‑1 (MQ=255) ccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGgcgc > 1:2613502‑M2/3‑71 (MQ=255) cAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGcgcg > 1:2710944‑M2/2‑71 (MQ=255) aGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGcgcg > 1:1736686/1‑70 (MQ=255) | AAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCG > Exported/428797‑428936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |