| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1735002 | 54 (0.920) | 6 (0.120) | 3/88 | NT | 9.9% | coding (154/729 nt) | recO | gap repair protein |
| ? | Exported | = 1735012 | 63 (1.240) | coding (144/729 nt) | recO | gap repair protein | |||||
ACTGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATTCCTC > Exported/1734943‑1735077 | aCTGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAc < 1:2813654‑M2/71‑2 (MQ=255) cTGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcc < 1:1517294‑M2/71‑3 (MQ=255) tGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcct < 1:3688815‑M2/71‑4 (MQ=255) tGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcct < 1:1241214‑M2/71‑4 (MQ=255) tGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcct < 1:3123735‑M2/71‑4 (MQ=255) gcgcAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctt < 1:116804‑M2/71‑5 (MQ=255) gcgcAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctt < 1:1887752‑M2/71‑5 (MQ=255) cgcAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAccttt > 1:693875‑M2/1‑66 (MQ=255) cgcAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAccttt < 1:1243062‑M2/71‑6 (MQ=255) gcAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctttc > 1:615470‑M2/1‑65 (MQ=255) cAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAccttt < 1:2472408‑M2/69‑6 (MQ=255) ttGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGt > 1:2342731/1‑68 (MQ=255) ttGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGt > 1:2212343/1‑68 (MQ=255) tGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGTGTGAAAGGCTGTAATGCACCTTTCAGGGTaga > 1:2674216/1‑70 (MQ=255) tGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag > 1:3427150/1‑71 (MQ=255) tGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag > 1:1263573/1‑71 (MQ=255) tGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag > 1:2984592/1‑71 (MQ=255) gACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGTGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag < 1:3335884/70‑1 (MQ=255) gACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag < 1:163562/70‑1 (MQ=255) gACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag < 1:2393766/70‑1 (MQ=255) aCTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCg > 1:3569758/1‑71 (MQ=255) ttCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctttca < 1:2934922‑M2/59‑8 (MQ=255) ttCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctttca < 1:2513263‑M2/59‑8 (MQ=255) ttCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAcctttca < 1:10935‑M2/59‑8 (MQ=255) ttCGCCACGCCCACCAAAACGTAGCAAGAGAGGGGTGAAAGG‑‑GTAATGCAcctttca < 1:384306‑M2/57‑8 (MQ=255) cGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGtt < 1:1499897/69‑1 (MQ=255) gCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAccttt < 1:2946481‑M2/54‑6 (MQ=255) gCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAccttt < 1:1078786‑M2/54‑6 (MQ=255) ccACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTaga < 1:965560/71‑1 (MQ=255) cgcccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTag > 1:3478351/1‑67 (MQ=255) ccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTgc > 1:85440/1‑71 (MQ=255) ccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTgc > 1:498619/1‑71 (MQ=255) ccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTgc > 1:2531518/1‑71 (MQ=255) ccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTg > 1:513307/1‑70 (MQ=255) ccgccAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTg > 1:1702353/1‑70 (MQ=255) aaaaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTag < 1:93228/50‑1 (MQ=255) aaaaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTag < 1:3234257/50‑1 (MQ=255) aaaaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCtt < 1:2632909/71‑1 (MQ=255) aaaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt > 1:2342950/1‑71 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCAc < 1:3324312‑M2/36‑2 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag > 1:2678720/1‑50 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTagag > 1:3735614/1‑50 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTg < 1:3572425/71‑1 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTg < 1:3568338/71‑1 (MQ=255) aaCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTg < 1:3172583/71‑1 (MQ=255) aCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTgg < 1:3679791/71‑1 (MQ=255) aCGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTgg < 1:3337659/71‑1 (MQ=255) cGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGc < 1:49122/71‑1 (MQ=255) gctgCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCa < 1:1747062/68‑1 (MQ=255) gTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTg > 1:61880/1‑60 (MQ=255) gTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCa < 1:3059403/71‑1 (MQ=255) gTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCa < 1:3276117/71‑1 (MQ=255) tAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCaa < 1:608299/71‑1 (MQ=255) agagagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGttt > 1:536968/1‑46 (MQ=255) agagagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGttt > 1:564006/1‑46 (MQ=255) agagagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGa < 1:402153/71‑1 (MQ=255) gagagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGac > 1:1447640/1‑71 (MQ=255) agagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacg < 1:1084792/71‑1 (MQ=255) agagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacg < 1:3532468/71‑1 (MQ=255) agagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacg < 1:3571962/71‑1 (MQ=255) gagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacg > 1:3084228/1‑70 (MQ=255) gagGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacg > 1:3610961/1‑70 (MQ=255) agGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTa > 1:86760/1‑43 (MQ=255) agGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt < 1:2405838/57‑1 (MQ=255) agGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt < 1:1728029/57‑1 (MQ=255) gggTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGacgcacg < 1:1194800/71‑1 (MQ=255) tGAAAGGCTGTAATGCAcctttcacccctctcttgctacgttttggcgggcgtgg > 1:1212414‑M2/1‑17 (MQ=255) tGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACgcgc < 1:1067268/71‑1 (MQ=255) tGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACgcgc < 1:3206934/71‑1 (MQ=255) gAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGcc > 1:2336967/1‑71 (MQ=255) aaaGGCTGTAATGCAcctttcacccctctcttgctacgttttggcgggcgtggcg < 1:3186171‑M2/55‑41 (MQ=255) aaaGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCg > 1:1633031/1‑41 (MQ=255) aaaGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGcc > 1:2678880/1‑47 (MQ=255) aaGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGcc < 1:2432109/69‑1 (MQ=255) ggCTGTAATGCACCTTTCAGGGTAGAGCTTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGa < 1:299738/71‑1 (MQ=255) ggCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTg > 1:168143/1‑48 (MQ=255) ggCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTg > 1:1136340/1‑48 (MQ=255) ggCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGcccc < 1:3291916/69‑1 (MQ=255) tGTAATGCAcctttcacccctctcttgctacgttttg < 1:380556‑M2/37‑29 (MQ=255) tGTAATGCAcctttcacccctctcttgctacgttttg < 1:384877‑M2/37‑29 (MQ=255) tGTAATGCAcctttcacccctctcttgctacgttttg < 1:2892750‑M2/37‑29 (MQ=255) tGTAATGCAcctttcacccctctcttgctacgttttg < 1:700421‑M2/37‑29 (MQ=255) tGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCa < 1:2173928/52‑1 (MQ=255) tGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATtc > 1:924934/1‑71 (MQ=255) tAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCt < 1:666787/40‑1 (MQ=255) tAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATtcct < 1:3693176/71‑1 (MQ=255) tAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATtcct > 1:3468779/1‑71 (MQ=255) tAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATtcct < 1:1742558/71‑1 (MQ=255) aaTGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATtcctc > 1:910270/1‑71 (MQ=255) aTGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt > 1:1633439/1‑40 (MQ=255) aTGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt > 1:2689339/1‑40 (MQ=255) aTGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt > 1:2104630/1‑40 (MQ=255) aTGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCttt > 1:118690/1‑40 (MQ=255) gCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAg < 1:2015603/47‑1 (MQ=255) gCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAg < 1:3634747/47‑1 (MQ=255) | ACTGCGCAGCGTTTTGACTTCGCCACGCCCGCCAAAACGTAGCAAGAGAGGGGTGAAAGGCTGTAATGCACCTTTCAGGGTAGAGCGTTTAGAGCGTGCGCCTTTGGCAACCAGACGCACGCGCCCCGATTCCTC > Exported/1734943‑1735077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |