| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 182326 | 60 (1.070) | 3 (0.070) | 3/82 | NT | 5.1% | intergenic (+18/‑137) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator |
| ? | AP009048 | = 182334 | 64 (1.410) | intergenic (+26/‑129) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator | |||||
CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/182247‑182326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccttccCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG < AP009048/182334‑182266 CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCA < 1:523117/71‑1 TGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCT < 1:1982820/71‑1 TGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCT < 1:113686/71‑1 CTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAAC > 1:1945772/1‑65 CTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACATGTTAATGCAGTAATCTCCCTCAACCCCTT < 1:4564844/70‑1 GCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTT > 1:469149/1‑67 CAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTT < 1:567893/62‑1 CACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTC > 1:399365/1‑42 TCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCAGGA < 1:4711592/49‑1 TACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCAGGAAGGG > 1:2888048/1‑51 GTTAATGCAGTAATCTCCCTCAACCCCTTCCCGTTTTCA > 1:3111578/1‑39 AACCCCTTCTCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGC < 1:4630583/71‑1 AACCCCTTCTCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGC < 1:4624588/71‑1 ACCCCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCG < 1:84712/71‑1 ACCCCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCG > 1:1554127/1‑71 CCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCT > 1:1799901/1‑59 CCTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTG > 1:172216/1‑57 CTTCCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGA < 1:3253844/71‑1 CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG > 1:676246/1‑71 CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCT > 1:4036961/1‑66 CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATG > 1:1281348/1‑50 CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCAT > 1:4820175/1‑37 CCCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCAT > 1:4814148/1‑37 CCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGA < 1:2186535/67‑1 CGTCTGTGCTGGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/182247‑182326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccttccCGTTTTCAGGAAGGGGTTGAGGGAGATTACTGCATTAACAGGTAGATGGTGCTGTCGCCGCGCTGAATG < AP009048/182334‑182266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |