| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 182326 | 60 (1.070) | 3 (0.070) | 3/82 | NT | 5.1% | intergenic (+18/‑137) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator |
| ? | AP009048 | = 182334 | 64 (1.410) | intergenic (+26/‑129) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator | |||||
Only 100 of 117 total aligned reads displayed.
GGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCT > AP009048/182257‑182395 | gCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCt > 1:2105247/1‑70 (MQ=255) gCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCt > 1:1511867/1‑70 (MQ=255) cACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGa < 1:4261956/71‑1 (MQ=255) aCTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaa < 1:1803291/71‑1 (MQ=255) tCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa > 1:2934533/1‑71 (MQ=255) aaCATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa < 1:4909138/69‑1 (MQ=255) aaCATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa < 1:4319702/69‑1 (MQ=255) aCATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCATCCTGAAAACg > 1:1330982/1‑70 (MQ=255) cATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGgg > 1:676246‑M2/1‑69 (MQ=255) tCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGggaag < 1:3253844‑M2/71‑6 (MQ=255) tCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGg < 1:2186535‑M2/67‑2 (MQ=255) aGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaa > 1:1557485/1‑60 (MQ=255) aGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaa > 1:705334/1‑60 (MQ=255) aGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGgg > 1:4036961‑M2/1‑64 (MQ=255) cgcgGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaa > 1:3715972/1‑58 (MQ=255) cgcgGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGggaaggggt < 1:84712‑M2/71‑10 (MQ=255) gcggcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGagaaggggtt < 1:4630583‑M2/71‑11 (MQ=255) cggcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTtc < 1:4981776/71‑1 (MQ=255) cggcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTtc < 1:2324570/71‑1 (MQ=255) ggcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTtct > 1:4790266/1‑71 (MQ=255) gcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa > 1:1099256/1‑56 (MQ=255) gcgACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAAc < 1:1854029/57‑1 (MQ=255) gACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCt < 1:3888984/71‑1 (MQ=255) gACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCt > 1:2549971/1‑71 (MQ=255) gACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCt < 1:1384026/71‑1 (MQ=255) gACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCt < 1:1515244/71‑1 (MQ=255) cAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTa > 1:2174914/1‑71 (MQ=255) aGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGggaagg > 1:1799901‑M2/1‑53 (MQ=255) cACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGggaagg > 1:172216‑M2/1‑51 (MQ=255) cACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACaa > 1:4625211/1‑71 (MQ=255) cACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACaa > 1:4821317/1‑71 (MQ=255) ccATCTACGTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTg < 1:4293625/43‑1 (MQ=255) cATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGgg > 1:1281348‑M2/1‑48 (MQ=255) cATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCt < 1:1493942/71‑1 (MQ=255) cATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCt < 1:4789112/71‑1 (MQ=255) tCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCcgttttcagga < 1:4711592‑M1/49‑12 (MQ=255) tCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa > 1:4737686/1‑44 (MQ=255) tACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCcgttttcaggaaggg > 1:2888048‑M1/1‑36 (MQ=255) tACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCtgtg > 1:636413/1‑70 (MQ=255) aCCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGaaaa > 1:3863340/1‑41 (MQ=255) ccTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCtgtg < 1:1255001/68‑1 (MQ=255) cTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACt < 1:3900552/71‑1 (MQ=255) cTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACt > 1:5015507/1‑71 (MQ=255) gTTAATGCAGTAATCTCCCTCAACCCCTTCCcgttttca > 1:3111578‑M1/1‑31 (MQ=255) ttAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACtt < 1:240524/69‑1 (MQ=255) aaTGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcac > 1:105274/1‑70 (MQ=255) aaTGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcac < 1:2710751/70‑1 (MQ=255) aTGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGgg > 1:4814148‑M2/1‑35 (MQ=255) aTGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAAc > 1:1818987/1‑64 (MQ=255) tGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcaccac < 1:67465/71‑1 (MQ=255) tGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcaccac < 1:969791/71‑1 (MQ=255) aGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCtgtg < 1:4430135/57‑1 (MQ=255) aGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTc < 1:4970462/63‑1 (MQ=255) gTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACtt < 1:1693420/61‑1 (MQ=255) gTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACtt < 1:1687332/61‑1 (MQ=255) aTCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTcc < 1:1354993/70‑1 (MQ=255) aTCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCa > 1:2027342/1‑71 (MQ=255) tctcCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCa > 1:1492371/1‑70 (MQ=255) ctcCCTCAACCCCTTCCTGAAAACTGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATa > 1:2484471/1‑71 (MQ=255) ctcCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcac > 1:2752542/1‑59 (MQ=255) ccTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACt > 1:4667219/1‑63 (MQ=255) ccTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCAt < 1:2148307/67‑1 (MQ=255) cTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCAt < 1:4621405/66‑1 (MQ=255) cTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATa > 1:95141/1‑67 (MQ=255) tCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcaccac > 1:4333805/1‑57 (MQ=255) aaCCCCTTCTcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgc < 1:4624588‑M1/71‑62 (MQ=255) aaCCCCTTCTcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgc < 1:4630583‑M1/71‑62 (MQ=255) aaCCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCtt > 1:4402838/1‑70 (MQ=255) aaCCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCt < 1:4453638/69‑1 (MQ=255) aaCCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCt < 1:3394894/69‑1 (MQ=255) aCCCCTTCCcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcg > 1:1554127‑M1/1‑9 (MQ=255) aCCCCTTCCcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcg < 1:84712‑M1/71‑63 (MQ=255) aCCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTtca > 1:3883502/1‑71 (MQ=255) cccTTCCTGAAAACGggaaggggttgagggagattactgcattaacaggta > 1:2888048‑M2/1‑15 (MQ=255) cccTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTtcat > 1:1191747/1‑70 (MQ=255) cccTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTtcat > 1:2843086/1‑70 (MQ=255) ccTTCCcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgct > 1:1799901‑M1/1‑6 (MQ=255) ccTTCCcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtg > 1:172216‑M1/1‑6 (MQ=255) ccTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACtt > 1:2763119/1‑45 (MQ=255) ccTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTtcatca < 1:1889327/71‑1 (MQ=255) cTTCCcgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcgctga < 1:3253844‑M1/71‑67 (MQ=255) cTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcaccac < 1:335906/50‑1 (MQ=255) ttCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTcaccac < 1:976711/49‑1 (MQ=255) ttCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCtt < 1:1205065/64‑1 (MQ=255) ttCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCatcatc > 1:118669/1‑71 (MQ=255) tCCTGAAAACGggaaggggttgagggagattactgcattaacaggtaga < 1:4711592‑M2/49‑39 (MQ=255) tCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATcc > 1:1482059/1‑71 (MQ=255) tCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATcc > 1:3462083/1‑71 (MQ=255) tCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATcc > 1:4460928/1‑71 (MQ=255) cccgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcgctgaatg > 1:676246‑M1/1‑2 (MQ=255) cccgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcgct > 1:4036961‑M1/1‑2 (MQ=255) cccgttttcaggaaggggttgagggagattactgcat > 1:4820175‑M1/1‑2 (MQ=255) cccgttttcaggaaggggttgagggagattactgcat > 1:4814148‑M1/1‑2 (MQ=255) ccTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAAc > 1:2633839/1‑39 (MQ=255) ccTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCt > 1:5164835/1‑71 (MQ=255) ccTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCt > 1:1579242/1‑71 (MQ=255) ccTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCt > 1:1290973/1‑71 (MQ=255) ccTGAAAACGGGAAGGGGATCTCCTTACAATCTGTGAACTTcacc > 1:1351165/1‑45 (MQ=255) ccgttttcaggaaggggttgagggagattactgcattaacaggtagatggtgctgtcgccgcgctga < 1:2186535‑M1/67‑67 (MQ=255) cTGAAAACGGGAAGGGGTTCTCCTTACAATCtgtg < 1:685614/35‑1 (MQ=255) | GGCACTCAACATTCAGCGCGGCGACAGCACCATCTACCTGTTAATGCAGTAATCTCCCTCAACCCCTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCT > AP009048/182257‑182395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |