| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 427841 | 56 (1.000) | 3 (0.060) | 3/90 | NT | 5.5% | coding (971/1848 nt) | secD | SecYEG protein translocase auxillary subunit |
| ? | AP009048 | = 427846 | 54 (1.090) | coding (976/1848 nt) | secD | SecYEG protein translocase auxillary subunit | |||||
CGGGCGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/427766‑427841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgaTATGGTCACCGGTCAGAATTACGCGTTTGTACAGCACAACTGGCTGACCTTCGCGGGTCTGTTTCACTT < AP009048/427846‑427778 CGGGCGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACC > 1:279720/1‑71 GGGCGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCG < 1:4350094/71‑1 GCGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGT < 1:2777087/71‑1 CGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGTG < 1:1013538/71‑1 CGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGT > 1:1579272/1‑70 AAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGTGATATGGTCACCGG < 1:4079482/71‑1 ACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCG < 1:3191282/53‑1 GTGCTGTACAAACGCGTAATTCTGACCGGTGATATGGTCACCG > 1:65399/1‑43 TGCTGTACAAACGCGTAATTCTGACCGGTGATATGGTCACCG < 1:4886482/42‑1 CGGTGATATGGTCACCGGTCAGAATTACGCGTTTGTACAGCACAACTGGCTGACCTTCGCGGGTCTGTTT > 1:5125110/1‑70 GGTGATATGGTCACCGGTCAGAATTACGCGTTTGTACAGCACAACTGGCTGACCTTCGCGGGTCTGTTTCA > 1:682859/1‑71 ATATGGTCACCGGTCAGAATTACGCGTTTGTACAGCACAACTGGCTGACCTTCGCGGGTCTGTTTCACTT > 1:1109373/1‑70 CGGGCGACTCTGAAGTGAAACAGACCCGCGAAGGTCAGCCAGTTGTGCTGTACAAACGCGTAATTCTGACCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/427766‑427841‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgaTATGGTCACCGGTCAGAATTACGCGTTTGTACAGCACAACTGGCTGACCTTCGCGGGTCTGTTTCACTT < AP009048/427846‑427778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |