New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 566000 =NA (NA)68 (1.210) 42/102 NT 100% intergenic (+90/‑56) ybcD/insE DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
?AP009048 = 576913 0 (0.000)coding (78/498 nt) ybcS predicted lysozyme

ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/566066‑566000
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT  <  AP009048/576913‑576844
                                                                                                                                         
ATGTGAGTCACCTCTGACTTAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT                                                                     <  1:2245029/70‑1
ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT                                                                     <  1:892624/70‑1
ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT                                                                     <  1:2063053/70‑1
  GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGAT                                                                  >  1:4894861/1‑71
   TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGAT                                                                  >  1:1426608/1‑70
   TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGA                                                                   >  1:1734716/1‑69
     AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTA                                                                <  1:340839/70‑1
      GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAATATCAAGTGATTAAC                                                              <  1:3481333/71‑1
      GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT                                                                     <  1:3944561/64‑1
       TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAAC                                                              <  1:1244648/70‑1
         ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAGCACT                                                           >  1:3091843/1‑71
         ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAAC                                                              <  1:2160147/68‑1
          CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTG                                                          <  1:962789/71‑1
          CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATT                                                                 <  1:2396553/64‑1
           CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGA                                                         >  1:2974011/1‑71
             CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGA                                                                   >  1:3540482/1‑59
             CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGA                                                                   >  1:3255449/1‑59
              TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGC                                                      >  1:137134/1‑71
                 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGC                                                      <  1:1571509/68‑1
                   GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAG                                                 >  1:4412005/1‑71
                    AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATt                                                  <  1:2411597/69‑2
                    AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAG                                                 >  1:3808083/1‑70
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:3904497/71‑1
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:4444500/71‑1
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:3004548/71‑1
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGC                                                >  1:5076967/1‑70
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAA                                                                       >  1:465689/1‑47
                     GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAA                                                                       >  1:1127655/1‑47
                      AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAA                                                               <  1:2899006/54‑1
                      AGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATT                                                                 >  1:92765/1‑52
                       GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAAT                                             >  1:2707551/1‑71
                        TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATT                                            >  1:2695832/1‑71
                        TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATT                                            >  1:2871404/1‑71
                         TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTG                                           >  1:5055669/1‑71
                          TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGC                                          >  1:1936595/1‑71
                          TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGC                                          >  1:3817141/1‑71
                          TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTG                                                          >  1:1760565/1‑55
                           ACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGC                                          <  1:3227905/70‑1
                            CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCT                                         <  1:1413664/70‑1
                            CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCT                                         <  1:1488195/70‑1
                               ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGC                                     >  1:4250068/1‑71
                               ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGC                                     >  1:2825982/1‑71
                               ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTG                                                          <  1:3634821/50‑1
                               ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAA                                                                       >  1:4636409/1‑37
                                CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTC                                        <  1:2617725/67‑1
                                CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATT                                                                 <  1:3208585/42‑1
                                 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCA                                   >  1:3374109/1‑71
                                 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCA                                   >  1:4956028/1‑71
                                 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAG                                                                      >  1:4086539/1‑36
                                  TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCAC                                  >  1:2630084/1‑71
                                  TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAA                                                               >  1:1823719/1‑42
                                  TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTG                                                                    >  1:4051996/1‑37
                                   AGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGT                                                                     >  1:4860663/1‑35
                                      CGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:308737/54‑1
                                      CGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:4178241/54‑1
                                       GCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCT                                         <  1:849390/59‑1
                                       GCGTGTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGAAATTGCTCCGCCACAAA                               >  1:5097385/1‑69
                                           GTCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAG                         >  1:1494413/1‑71
                                            TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATA                             <  1:1359574/66‑1
                                            TCCACTATTGCTGGGTAAGATCAAGTGATTAACACTGAT                                                        <  1:43472/39‑1
                                             CCACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCA                          >  1:726281/1‑68
                                              CACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGC                        <  1:902720/69‑1
                                              CACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGC                        <  1:820556/69‑1
                                               ACTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCT                                         <  1:1258625/51‑1
                                                CTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGC                     >  1:5185580/1‑70
                                                CTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCT                                                     <  1:5087862/38‑1
                                                CTATTGCTGGGTAAGATCAAGTGATTAACACTGATGCT                                                     <  1:3431281/38‑1
                                                 TATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAA                   >  1:4929085/1‑71
                                                 TATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATA                             <  1:1407947/61‑1
                                                 TATTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTC                                        >  1:59336/1‑50
                                                   TTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAA                   <  1:1709255/69‑1
                                                   TTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAA                   <  1:2423771/69‑1
                                                   TTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCA                    <  1:3070429/68‑1
                                                   TTGCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAA                               >  1:2966257/1‑57
                                                     GCTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGC               >  1:1385444/1‑71
                                                      CTGGGTAAGATCAAGTGATTAACACTGATGCTATAGCA                                               <  1:600086/38‑1
                                                           TAAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCC                                    <  1:2915373/44‑1
                                                            AAGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGC                                     >  1:1826932/1‑42
                                                             AGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGT        >  1:1878908/1‑70
                                                             AGATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGT        >  1:4476747/1‑70
                                                             AGATCAAGTGATTAACACTGATGCTATAGCAATTGC                                          >  1:1097820/1‑36
                                                               ATCAAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTT            <  1:3333697/64‑1
                                                                  AAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT  <  1:1820110/71‑1
                                                                  AAGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAA                               >  1:263256/1‑42
                                                                                                                                         
ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/566066‑566000
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATTAACACTGATGCTATAGCAATTGCTCCGCCACCAATAGCAGCAGCAACGGCTTTTCGTAATGAT  <  AP009048/576913‑576844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.