| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 566000 = | NA (NA) | 68 (1.210) | 42/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | AP009048 | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
CATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > AP009048/565931‑566063 | cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt > 1:4299014/1‑70 (MQ=255) aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa > 1:1841918/1‑71 (MQ=255) ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt < 1:697513/70‑1 (MQ=255) ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt < 1:2229170/70‑1 (MQ=255) cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTa < 1:2723160/71‑1 (MQ=255) ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc > 1:3247720/1‑71 (MQ=255) ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc > 1:241355/1‑71 (MQ=255) gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc > 1:1700926/1‑70 (MQ=255) aCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc < 1:1159147/71‑1 (MQ=255) cGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCa < 1:5174141/71‑1 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt < 1:2664412/56‑1 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa < 1:5182072/71‑1 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa < 1:3582167/71‑1 (MQ=255) aaGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt > 1:3521020/1‑71 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt > 1:4464442/1‑70 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt > 1:4458466/1‑70 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg > 1:2946222/1‑71 (MQ=255) agCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAt > 1:2281362/1‑65 (MQ=255) tCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGacac < 1:3572933/70‑1 (MQ=255) cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt > 1:902542/1‑49 (MQ=255) cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGacac < 1:3925262/69‑1 (MQ=255) cTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc > 1:3249516/1‑71 (MQ=255) tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc < 1:3904437/68‑1 (MQ=255) tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc < 1:258893/68‑1 (MQ=255) cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:43687/70‑1 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:4628526/1‑69 (MQ=255) caGGACGTTGCCGCGGTAACAGGGGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:3587606/1‑71 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc < 1:1911197/49‑1 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:874155/71‑1 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:1708597/71‑1 (MQ=255) aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:4522836/71‑1 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:3709533/1‑70 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:3591019/1‑70 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:2842232/70‑1 (MQ=255) gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2797484/1‑69 (MQ=255) cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:1044122/1‑70 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:377046/71‑1 (MQ=255) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt < 1:4664006/49‑1 (MQ=255) gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGac > 1:1559357/1‑51 (MQ=255) gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:4381176/1‑71 (MQ=255) cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:3597695/1‑71 (MQ=255) tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg > 1:2794106/1‑41 (MQ=255) tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:412224/67‑1 (MQ=255) tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:4014437/71‑1 (MQ=255) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:4347664/55‑1 (MQ=255) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:3689194/1‑70 (MQ=255) aaCAGGCGCAACCGTAATATGATCTTACCCAGCAATa > 1:5012742/1‑37 (MQ=255) aCAGGCGCAACCGTAGTCTGATCTTACCCAGCAATAGTGGac > 1:1786102/1‑42 (MQ=255) aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct < 1:3262273/63‑1 (MQ=255) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:3234490/1‑63 (MQ=255) ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:5149145/1‑71 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:1884045/67‑1 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc < 1:4145425/66‑1 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc < 1:3736693/66‑1 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:2524102/1‑71 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:1884202/1‑71 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg > 1:2518052/1‑71 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:4451804/71‑1 (MQ=255) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:4796380/1‑50 (MQ=255) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:5167739/65‑1 (MQ=40) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:739976/71‑1 (MQ=39) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:1905607/1‑68 (MQ=37) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:4761396/71‑1 (MQ=35) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:1675254/71‑1 (MQ=35) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:982313/71‑1 (MQ=35) aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:3333327/1‑53 (MQ=35) ccGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca > 1:4854683/1‑57 (MQ=33) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1175460/71‑1 (MQ=31) | CATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > AP009048/565931‑566063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |