New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 1220342	66 (1.170)	3 (0.060)	3/94	NT	5.2%	coding (1438/1524 nt)	ycgG	conserved inner membrane protein
	?	AP009048	= 1220359	49 (0.940)					coding (1455/1524 nt)	ycgG	conserved inner membrane protein

TATCGTCGCTGAAGGTGTCGAAACGAAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1220269‑1220342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTTTATAGAAATAATAACCCTGCTGAAATGTGATATAATTTTGGTTCAGATAG  <  AP009048/1220359‑1220308                                                                                                                                TATCGTCGCTGAAGGTGTCGAAACGAAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGC                                                         <  1:2971662/71‑1                  TCGAAACGAAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGC                                                         <  1:1431892/54‑1                       ACGAAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGTTTATAGAAATAATAACCC                                   >  1:1734949/1‑71                                                  CAAAATTATATCACATTTCAGCAGGTTTATAGAAATAATAACCCT                                  >  1:4955842/1‑45                                                     AATTATATCACATTTCAGCAGGTTTATAGAAATAATAACCC                                   >  1:2321894/1‑41                                                                        AGGTTTATAGAAATAATAACCCTGCTGAAATGTGATATAATTTTGGTTCAGATAG  <  1:2226824/55‑1                                                                                                                                TATCGTCGCTGAAGGTGTCGAAACGAAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/1220269‑1220342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTTTATAGAAATAATAACCCTGCTGAAATGTGATATAATTTTGGTTCAGATAG  <  AP009048/1220359‑1220308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.