| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1220342 | 66 (1.170) | 3 (0.060) | 3/94 | NT | 5.2% | coding (1438/1524 nt) | ycgG | conserved inner membrane protein |
| ? | AP009048 | = 1220359 | 49 (0.940) | coding (1455/1524 nt) | ycgG | conserved inner membrane protein | |||||
AAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTTGTGGTTGAGTGA > AP009048/1220294‑1220428 | aaaGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGt < 1:259971/71‑1 (MQ=255) aacaacTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTtaca > 1:687088/1‑71 (MQ=255) caacTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTtacata > 1:1486218/1‑71 (MQ=255) aacTTGACTATCTGAACCAAAATTATATCACA‑TTCAGCAGGGTTATTATTTCTATAAACCTGTtacat < 1:260231/68‑1 (MQ=255) ttGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATc > 1:783602/1‑71 (MQ=255) gACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGa > 1:3380575/1‑71 (MQ=255) aCTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGAc > 1:1869388/1‑71 (MQ=255) cTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAAcct < 1:2226824‑M2/55‑4 (MQ=255) tCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTtacataca > 1:1832499/1‑62 (MQ=255) tCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTacatacat > 1:3468411/1‑63 (MQ=255) tCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCt < 1:3875181/69‑1 (MQ=255) tCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTgg > 1:2357036/1‑71 (MQ=255) tCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTg < 1:4917361/70‑1 (MQ=255) cTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATaaa > 1:154898/1‑48 (MQ=255) cTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGt > 1:4435223/1‑71 (MQ=255) tGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTta < 1:2733033/54‑1 (MQ=255) tGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGAc > 1:2208617/1‑65 (MQ=255) tGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGt > 1:3228556/1‑70 (MQ=255) aaCCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCaa < 1:3215308/71‑1 (MQ=255) ccAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCaaaa > 1:1169072/1‑71 (MQ=255) aaaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTtaca > 1:2250756/1‑50 (MQ=255) aaaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGa > 1:3369055/1‑58 (MQ=255) aaaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAAtt < 1:2510259/71‑1 (MQ=255) aaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTa > 1:602094/1‑71 (MQ=255) aaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTa > 1:18388/1‑71 (MQ=255) aaaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTa > 1:951185/1‑71 (MQ=255) aaTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTtaca > 1:1289939/1‑48 (MQ=255) aTTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATc > 1:4033263/1‑71 (MQ=255) ttATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATcc < 1:3878260/71‑1 (MQ=255) atatCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCt < 1:3058703/70‑1 (MQ=255) atCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTc < 1:1263556/57‑1 (MQ=255) tCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTc < 1:4562936/70‑1 (MQ=255) acaTTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTaa < 1:1442540/71‑1 (MQ=255) acaTTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTa < 1:2140441/70‑1 (MQ=255) acaTTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTa < 1:13475/70‑1 (MQ=255) caTTTCAGCAGGGTTATTATTTCTATAAACCTGTtagataca < 1:4286364/42‑1 (MQ=255) aTTTCAGCAGGGTTATTATTTCTATAAACCTGTtacataca < 1:13924/41‑1 (MQ=255) aTTTCAGCAGGGTTATTATTTCTATAAACCTGTtacata > 1:2367934/1‑39 (MQ=255) aTTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAAc > 1:2761495/1‑71 (MQ=255) tttCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATc > 1:897370/1‑60 (MQ=255) tttCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAAcc > 1:1821992/1‑71 (MQ=255) tCAGCAGGGTTATTATTTCTATAAACCTGTTacatacat > 1:5110561/1‑39 (MQ=255) tCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCg > 1:2456890/1‑70 (MQ=255) tCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCg > 1:5044915/1‑70 (MQ=255) cagcagGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCga < 1:846881/70‑1 (MQ=255) agcagGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCgaag > 1:278561/1‑71 (MQ=255) cagGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCgaaggt < 1:320959/71‑1 (MQ=255) agGGTTATTATTTCTATAAAcctgctgaaatgtgatataattttg > 1:4955842‑M2/1‑20 (MQ=255) agGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAAc > 1:4365928/1‑63 (MQ=255) agGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCgaaggt > 1:3761312/1‑70 (MQ=255) gggTTGTTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCgaaggtga < 1:4131999/71‑1 (MQ=255) gggTTATTATTTCTATAAAcctgctgaaatgtgatataattttggttcagatagtcaagttgttctttcgt > 1:1734949‑M2/1‑19 (MQ=255) gggTTATTATTTCTATAAAcctgctgaaatgtgatataatt > 1:2321894‑M2/1‑19 (MQ=255) gTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCttt > 1:377372/1‑54 (MQ=255) tattatTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCgaaggtgaaggt > 1:848491/1‑71 (MQ=255) attattTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGtt > 1:3055730/1‑71 (MQ=255) tattTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTtg < 1:1448483/70‑1 (MQ=255) tttCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTtgtg < 1:4055581/70‑1 (MQ=255) cTATAAACCTGTTACATACATCGACCTGGTCaaaa > 1:4903578/1‑35 (MQ=255) ataAACCTGTTACATACATCGACCTGGTCAAAATTATCCt > 1:2452004/1‑40 (MQ=255) ataAACCTGTTACATACATCGACCTGGTCAAAATTATCCt > 1:1615531/1‑40 (MQ=255) aaCCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTTGTGGTTGAGTg > 1:2744157/1‑70 (MQ=255) aaCCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTTGTGGTTGAGTGa < 1:991922/71‑1 (MQ=255) aCCTGTTACATACATCGACCTGGTCAAAATTATCCTTTc > 1:1146746/1‑39 (MQ=255) | AAAGAACAACTTGACTATCTGAACCAAAATTATATCACATTTCAGCAGGGTTATTATTTCTATAAACCTGTTACATACATCGACCTGGTCAAAATTATCCTTTCTAAACCGAAGGTGAAGGTTGTGGTTGAGTGA > AP009048/1220294‑1220428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |