| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2037434 | 56 (1.000) | 3 (0.070) | 3/78 | NT | 6.4% | intergenic (+54/‑538) | yedS/hchA | ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone |
| ? | AP009048 | = 2037442 | 45 (1.050) | intergenic (+62/‑530) | yedS/hchA | ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone | |||||
GCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2037354‑2037434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgagttcgATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGACTGATTA < AP009048/2037442‑2037378 GCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTA > 1:3478352/1‑70 CTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGC < 1:3953204/71‑1 CTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGC > 1:2430862/1‑71 CTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAG < 1:4697124/70‑1 TGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTG < 1:1431443/71‑1 TGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTA < 1:998588/66‑1 AGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCG < 1:2699186/70‑1 AGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTC < 1:399382/69‑1 CAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGC > 1:3753195/1‑54 AATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGC > 1:4039520/1‑47 AATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGC > 1:4033398/1‑47 ATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGATGAGGGACGAACT < 1:2463847/69‑1 AGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGATGAGGGACGAACTCA < 1:3614998/68‑1 TGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGATGAGGGACGAACTCAGGCTAG > 1:3798798/1‑63 AGCCTGAGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGAC > 1:1485584/1‑71 GCCTGAGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAG < 1:547954/40‑1 TGAGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTA < 1:197778/47‑1 GAGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGACTGAT > 1:2386947/1‑70 AGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCTGCAGCGAGTTGACTGAT < 1:2104095/69‑1 AGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGACTGATTA < 1:1674358/71‑1 AGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGACTGATT < 1:4749682/70‑1 AGTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAG > 1:1588103/1‑56 GTTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAG > 1:3846413/1‑55 TTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTA < 1:1315546/43‑1 TTCGATGAGGGACGAACTCAGGCTAGTGTTCAGTTTT < 1:1080580/37‑1 GCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2037354‑2037434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgagttcgATGAGGGACGAACTCAGGCTAGTGTTCAGTTTTACAGTAACACGCCGCAGCGAGTTGACTGATTA < AP009048/2037442‑2037378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |