| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2139625 | 52 (0.920) | 4 (0.080) | 4/92 | NT | 8.3% | intergenic (‑245/‑414) | wza/yegH | lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins |
| ? | AP009048 | = 2139640 | 42 (0.830) | intergenic (‑260/‑399) | wza/yegH | lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins | |||||
TCCAGACACGCTACCGCCCCTGGCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2139553‑2139625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcaTCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAGCC < AP009048/2139640‑2139574 TCCAGACACGCTACCGCCCCTGGCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCT < 1:3925676/71‑1 CCCTGGCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCATCAACGACTGCATGC < 1:4345265/71‑1 GGCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTC > 1:610264/1‑51 GCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCATCAACGACTGCATGCTGA < 1:3068538/69‑1 TTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCATCAACGACTGCATGCT < 1:5045203/65‑1 AGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCA < 1:846788/44‑1 CCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCATCAACGACTGCATGCTGAGAGGGTGTGAAA < 1:3419615/69‑1 TCTCATCAACTACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTAT < 1:3422107/56‑1 TCTCATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAGC > 1:271295/1‑71 TCTCATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAA < 1:537495/69‑1 TCTCATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTAT < 1:2731322/56‑1 CTCATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAG < 1:3776577/69‑1 ATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAGCC < 1:4732103/68‑1 ATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTA < 1:1566866/51‑1 ATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAA > 1:1327638/1‑42 TCCAGACACGCTACCGCCCCTGGCTTTTTAGCTACCAATACACTGATTTAGTTTAATTTTTCACACCCTCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2139553‑2139625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcaTCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAGCC < AP009048/2139640‑2139574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |