New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2273885 =	47 (0.840)	3 (0.060)	3/96	NT	6.2%	intergenic (+6/‑175)	spr/rtn	predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein
	?	AP009048	2273917 =	47 (0.890)					intergenic (+38/‑143)	spr/rtn	predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein

AAAACAAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2273957‑2273885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCG  >  AP009048/2273917‑2273984                                                                                                                                               AAAACAAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAA                                                                        <  1:653145/71‑1  AAACAAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAA                                                                        >  1:3306350/1‑70   AACAAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAACG                                                                      <  1:3749620/71‑1             CACTGCTTAGGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAAC                                                                       >  1:4833124/1‑60                                            TCAGGATAGCCAAGGGATTGCATCCAAACGAGTTAACTGAAAGCACTGCTT                                                 >  1:3159909/1‑51                                               GGATAGCCAAGGGATTGCATCCAAACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTT                                    >  1:1205897/1‑61                                                  TAGCCAAGGGATTGCATCCAAACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTT                              >  1:2042976/1‑64                                                                       ACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCG  >  1:1645421/1‑71                                                                                                                                               AAAACAAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCCAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2273957‑2273885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCG  >  AP009048/2273917‑2273984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.