| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2273885 = | 47 (0.840) | 3 (0.060) | 3/96 | NT | 6.2% | intergenic (+6/‑175) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein |
| ? | AP009048 | 2273917 = | 47 (0.890) | intergenic (+38/‑143) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein | |||||
CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGT > AP009048/2273849‑2273987 | cGAGGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGt > 1:5007927/1‑71 (MQ=255)cGAAGCACGCCGGGTTCTCGGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGt > 1:4975855/1‑71 (MQ=255) gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:3292307/71‑1 (MQ=255) gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:509965/71‑1 (MQ=255) cGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa < 1:293272/71‑1 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa > 1:2325932/1‑70 (MQ=255) ccGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTaa > 1:1417625/1‑65 (MQ=255) gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCAc < 1:4086552/71‑1 (MQ=255) gTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCAc < 1:1842583/71‑1 (MQ=255) ctcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGc > 1:3480532/1‑71 (MQ=255) tcAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt > 1:4568602/1‑71 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAAc > 1:2419148/1‑56 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt > 1:5069925/1‑69 (MQ=255) ccGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAg > 1:4414484/1‑70 (MQ=255) gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:993224/71‑1 (MQ=255) aGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGt > 1:5003942/1‑71 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACt > 1:1332497/1‑47 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt > 1:2421391/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa < 1:786612/53‑1 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:2905738/1‑71 (MQ=255) aaCCGTTTGGATTCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa > 1:1413747/1‑50 (MQ=255) aaCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttttt > 1:3255451/1‑70 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg > 1:2140911/1‑71 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg < 1:2648039/71‑1 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg < 1:1401393/71‑1 (MQ=255) aCCGTTTGGATGCAATCCCTTGGCTATCCTGACGACTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTg > 1:1345080/1‑71 (MQ=255) ccGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCa > 1:1401612/1‑59 (MQ=255) CGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt < 1:3749620‑M1/71‑1 (MQ=255) GTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCCTAAGCAGTg > 1:4833124‑M1/1‑60 (MQ=255) tcaggatagccaagggattgcatccaaacgAGTTAACTGAAAGCACTGCtt > 1:3159909‑M2/31‑51 (MQ=255) TTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtttt < 1:653145‑M1/71‑1 (MQ=255) TTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGttt > 1:3306350‑M1/1‑70 (MQ=255) ttGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt < 1:721775/49‑1 (MQ=255) ttGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt < 1:2714940/49‑1 (MQ=255) tGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCCTAAGc > 1:3280624/1‑53 (MQ=39) ggatagccaagggattgcatccaaacgAGTTAACTGAAAGCACTGCTTAGGCAGTGCtttt > 1:1205897‑M2/28‑61 (MQ=255) ggATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttca < 1:680948/70‑1 (MQ=255) gATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGc < 1:1450866/51‑1 (MQ=255) aTGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttcatt > 1:3227641/1‑70 (MQ=255) tagccaagggattgcatccaaacgAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGttt > 1:2042976‑M2/25‑64 (MQ=255) gCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAgg < 1:5100563/47‑1 (MQ=255) gCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGt > 1:808717/1‑51 (MQ=255) cAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATtcatc < 1:2793678/71‑1 (MQ=255) aaTCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 1:2907863/1‑69 (MQ=255) tCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTa < 1:4271024/41‑1 (MQ=255) tCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt < 1:2951658/52‑1 (MQ=255) tCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt < 1:270713/52‑1 (MQ=255) cTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAgaga > 1:308610/1‑70 (MQ=255) cTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaa < 1:2372657/71‑1 (MQ=255) cTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaa < 1:3927557/71‑1 (MQ=255) ttGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGc < 1:1467054/40‑1 (MQ=255) ttGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAgaga > 1:3312560/1‑69 (MQ=255) ggCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCagag > 1:989548/1‑66 (MQ=255) ggCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaaa < 1:1978575/69‑1 (MQ=255) ggCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAat > 1:3619871/1‑71 (MQ=255) gCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatg < 1:956476/71‑1 (MQ=255) gCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAat < 1:4416534/70‑1 (MQ=255) cTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatga < 1:1070141/71‑1 (MQ=255) tCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt < 1:4344685/40‑1 (MQ=255) tCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTTTTTTCATTCATCAGAGAAAATGATGt < 1:2975837/71‑1 (MQ=255) tCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATtcatca > 1:1827028/1‑58 (MQ=255) tCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGt > 1:3076186/1‑71 (MQ=255) cTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGttt < 1:2900566/71‑1 (MQ=255) tGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTc > 1:1357806/1‑71 (MQ=255) acgAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCcg > 1:1645421‑M2/4‑71 (MQ=255) aGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGt < 1:1384133/71‑1 (MQ=255) | CGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTTCCGCGT > AP009048/2273849‑2273987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |