| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2348802 | 40 (0.710) | 5 (0.100) | 3/90 | NT | 11.5% | coding (38/3753 nt) | yfaL | adhesin |
| ? | AP009048 | = 2348810 | 42 (0.850) | coding (30/3753 nt) | yfaL | adhesin | |||||
ATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2348731‑2348802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtaTTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGGCGGTCACTGA < AP009048/2348810‑2348745 ATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAG > 1:2195756/1‑70 TCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGT < 1:1875184/70‑1 TGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA > 1:3159273/1‑67 GGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGA > 1:3386552/1‑63 TGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGG < 1:4694905/49‑1 CGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTATTTATCTTTACTCCCGT > 1:4225232/1‑64 CGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTATTTATCTTTACTCCC > 1:2655928/1‑60 AGAGAAAAGAGATGCAATCATTGACGGGAGTATTTATCTTTACTC < 1:4649478/45‑1 AGAGAAAAGAGATGCAATCATTGACGGGAGTATTTATCTTTACTC < 1:1277691/45‑1 AAGAGATGCAATCATTGACGGGAGTATTTATCTTTACTC < 1:1740964/39‑1 GGAGTATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGGCGGTCACT > 1:5087460/1‑70 GAGTATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCT < 1:3033542/43‑1 GAGTATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCT < 1:2284083/43‑1 AGTATTTATCTTTACTCACGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGC < 1:3503800/58‑1 GTATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGGCGGTCACTGA < 1:603581/69‑1 TATTTATCTTTACTCCCGTCAATTATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGG < 1:2500193/58‑1 TATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGGCGGTCACTG < 1:2577469/67‑1 ATTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCT < 1:1992334/39‑1 ATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2348731‑2348802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtaTTTATCTTTACTCCCGTCAATGATTGCATCTCTTTTCTCTGCTAACGGTGTCGCGGCGGTCACTGA < AP009048/2348810‑2348745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |