| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2348802 | 40 (0.710) | 5 (0.100) | 3/90 | NT | 11.5% | coding (38/3753 nt) | yfaL | adhesin |
| ? | AP009048 | = 2348810 | 42 (0.850) | coding (30/3753 nt) | yfaL | adhesin | |||||
CCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCTATAAGACG > AP009048/2348734‑2348869 | ccTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTaaa < 1:2571180/71‑1 (MQ=255) tGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA > 1:3159273‑M1/1‑67 (MQ=255) gCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGAt > 1:4827053/1‑70 (MQ=255) aTGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATaaa > 1:1783440/1‑71 (MQ=255) aTCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTaaa > 1:1271910/1‑61 (MQ=255) tCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAtac < 1:603581‑M2/69‑4 (MQ=255) cAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAta < 1:2577469‑M2/67‑3 (MQ=255) aGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAtactcc > 1:5087460‑M2/1‑64 (MQ=255) aGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt < 1:5166415/71‑1 (MQ=255) aGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt > 1:4870673/1‑71 (MQ=255) gTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAg < 1:2722032/58‑1 (MQ=255) gccgcGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGa < 1:2488058/53‑1 (MQ=255) gccgcGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAg < 1:4612991/71‑1 (MQ=255) ccgcGACACCGTTAGCAGAGAAAAGAGATGCAATAATTGACGGGAGTAAAGATAAAta < 1:2500193‑M2/58‑3 (MQ=255) cgcgACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAtttatctttactcccgt > 1:4225232‑M1/1‑47 (MQ=255) cgcgACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGa > 1:1842182/1‑70 (MQ=255) cgcgACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGa < 1:716565/70‑1 (MQ=255) gcgACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGTGAGTAAAGATAAAtact < 1:3503800‑M2/58‑5 (MQ=255) cgACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAtttatctttactccc > 1:2655928‑M1/1‑45 (MQ=255) gACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGa < 1:1030103/71‑1 (MQ=255) gACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGa < 1:4360974/71‑1 (MQ=255) acCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt > 1:240223/1‑56 (MQ=255) acCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATaa > 1:4663177/1‑71 (MQ=255) ccGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAAt < 1:1038453/71‑1 (MQ=255) cGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATc > 1:915754/1‑71 (MQ=255) gTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATcc < 1:2546130/71‑1 (MQ=255) gTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATcc < 1:3612017/71‑1 (MQ=255) ttAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGAt > 1:483122/1‑42 (MQ=255) ttAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATaaa > 1:1901811/1‑45 (MQ=255) ttAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATc > 1:2649433/1‑69 (MQ=255) ttAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATc > 1:4866490/1‑69 (MQ=255) ttAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCg < 1:3368305/71‑1 (MQ=255) aGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCa > 1:1496842/1‑71 (MQ=255) gCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCat < 1:2346872/71‑1 (MQ=255) agagAAAAGAGATGCAATCATTGACGGGAGTAtttatctttactc < 1:4649478‑M1/45‑14 (MQ=255) agagAAAAGAGATGCAATCATTGACGGGAGTAtttatctttactc < 1:1277691‑M1/45‑14 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAtactc < 1:2284083‑M2/43‑6 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAtactc < 1:3033542‑M2/43‑6 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAt < 1:1992334‑M2/39‑2 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTg > 1:5032217/1‑47 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATAtt > 1:2589666/1‑70 (MQ=255) agaAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTa < 1:1363946/71‑1 (MQ=255) aaaGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTa < 1:247240/48‑1 (MQ=255) aaGAGATGCAATCATTGACGGGAGTAtttatctttactc < 1:1740964‑M1/39‑14 (MQ=255) aaGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCt < 1:2881065/71‑1 (MQ=255) aaGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCt < 1:4915816/71‑1 (MQ=255) agagAAGCTATCATTGACGGGAGTAAAGATTAATACTCCTTGCg < 1:3070186/44‑1 (MQ=37) agaTGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGa < 1:4814480/46‑1 (MQ=255) aTGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACca < 1:2291710/71‑1 (MQ=255) aTGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACca > 1:3746038/1‑71 (MQ=255) tGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACca < 1:2027027/70‑1 (MQ=255) aTCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCAtt < 1:3465439/71‑1 (MQ=255) tCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTa < 1:4362060/56‑1 (MQ=255) tCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCAttt > 1:2462129/1‑71 (MQ=255) tCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCAttt > 1:4248095/1‑71 (MQ=255) tCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCAttt > 1:4254240/1‑71 (MQ=255) aTTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCC‑CATATTAATCTAACCATCATTTTc > 1:1006106/1‑70 (MQ=255) ttGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTa < 1:3561960/53‑1 (MQ=255) gACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCa > 1:3892048/1‑46 (MQ=255) aCGGGAGTAAAGATAAAtactcccgtcaatgattgcatctcttttctctgctaacggtgtcgcg > 1:4225232‑M2/1‑17 (MQ=255) gggAGTAAAGATAAAtactcccgtcaatgattgcatctcttttctctgctaacggtgtcg > 1:2655928‑M2/1‑15 (MQ=255) ggAGTAtttatctttactcccgtcaatgattgcatctcttttctctgctaacggtgtcgcggcggtcact > 1:5087460‑M1/1‑6 (MQ=255) ggAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCTATAAGa < 1:4560539/71‑1 (MQ=255) gAGTAtttatctttactcccgtcaatgattgcatctcttttct < 1:2284083‑M1/43‑39 (MQ=255) gAGTAtttatctttactcccgtcaatgattgcatctcttttct < 1:3033542‑M1/43‑39 (MQ=255) gAGTAAAGATAAAtactcccgtcaatgattgcatctcttttctct < 1:1277691‑M2/45‑33 (MQ=255) gAGTAAAGATAAAtactcccgtcaatgattgcatctcttttctct < 1:4649478‑M2/45‑33 (MQ=255) gAGTAAAGATAAAtactcccgtcaatgattgcatctctt < 1:1740964‑M2/39‑27 (MQ=255) gAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCTATAAGAc < 1:304913/71‑1 (MQ=255) aGTAtttatctttactcacgtcaatgattgcatctcttttctctgctaacggtgtcgc < 1:3503800‑M1/58‑55 (MQ=255) aGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTc < 1:4884070/62‑1 (MQ=255) aGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCTATAAGACg < 1:4216022/71‑1 (MQ=255) gTAtttatctttactcccgtcaatgattgcatctcttttctctgctaacggtgtcgcggcggtcactga < 1:603581‑M1/69‑67 (MQ=255) gTAAAGATAAATACTCCTTGCGTAGAAAGATAATc < 1:409089/35‑1 (MQ=255) tAtttatctttactcccgtcaattattgcatctcttttctctgctaacggtgtcgcgg < 1:2500193‑M1/58‑57 (MQ=255) tAtttatctttactcccgtcaatgattgcatctcttttctctgctaacggtgtcgcggcggtcactg < 1:2577469‑M1/67‑66 (MQ=255) tAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCtat < 1:2655109/63‑1 (MQ=255) atttatctttactcccgtcaatgattgcatctcttttct < 1:1992334‑M1/39‑39 (MQ=255) | CCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAGAAAGATAATCCGCATATTAATCTAACCATCATTTTCTATAAGACG > AP009048/2348734‑2348869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |