| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2764547 = | 45 (0.800) | 3 (0.060) | 3/90 | NT | 6.8% | intergenic (‑115/‑27) | yfjM/yfjN | hypothetical protein/hypothetical protein |
| ? | AP009048 | 2764565 = | 43 (0.870) | intergenic (‑133/‑9) | yfjM/yfjN | hypothetical protein/hypothetical protein | |||||
ATATTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2764620‑2764547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatgggATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCAAATATCGAGACTGAATC > AP009048/2764565‑2764632 ATATTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATAT < 1:2728854/71‑1ATATTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATA < 1:858943/70‑1 ATTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATATG < 1:1318914/70‑1 TTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATATGG < 1:1189592/70‑1 TTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATA > 1:1227747/1‑45 TTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACAT > 1:4396244/1‑44 CTCCTGATTGTCATTTCCTGGATCCCATAGAAACATA > 1:1482739/1‑37 GATCCCATAGAAACATATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGG > 1:136114/1‑70 CCCATAGAAACATATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCA < 1:614194/69‑1 CATAGAAACATATGGGATCCAGGAAATGACAATCAGGAGTTACAAA < 1:2777859/46‑1 TGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCAAATATCGAGACTGAAT < 1:4844328/71‑1 TGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCAAATATCGAGACTG < 1:4341041/68‑1 TGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTA < 1:2294067/40‑1 TGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTT < 1:2630498/39‑1 GGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCAAATATCGAGACTGAATC < 1:1090113/70‑1 GATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGG < 1:519076/49‑1 ATATTTGCCCTGACCAGATTTAAGTTTTTGTAACTCCTGATTGTCATTTCCTGGATCCCATAGAAACATATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2764620‑2764547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatgggATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCAAATATCGAGACTGAATC > AP009048/2764565‑2764632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |