| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2764547 = | 45 (0.800) | 3 (0.060) | 3/90 | NT | 6.8% | intergenic (‑115/‑27) | yfjM/yfjN | hypothetical protein/hypothetical protein |
| ? | AP009048 | 2764565 = | 43 (0.870) | intergenic (‑133/‑9) | yfjM/yfjN | hypothetical protein/hypothetical protein | |||||
AGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGC > AP009048/2764477‑2764614 | aGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcc < 1:4212806/71‑1 (MQ=255) gattcagtctcgatatttgccctgaccagatttaagtttttgtaactcctgattgtcatttcctggatcc < 1:1090113‑M1/2‑1 (MQ=255) gCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcc < 1:3934024/68‑1 (MQ=255) attcagtctcgatatttgccctgaccagatttaagtttttgtaactcctgattgtcatttcctggatCCCa < 1:4844328‑M1/4‑1 (MQ=255) cagtctcgatatttgccctgaccagatttaagtttttgtaactcctgattgtcatttcctggatCCCa < 1:4341041‑M1/4‑1 (MQ=255) cTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGt > 1:5022108/1‑71 (MQ=255) cAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTa > 1:2487057/1‑71 (MQ=255) tGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTc > 1:1051781/1‑65 (MQ=255) gggCAAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTc < 1:2717867/64‑1 (MQ=255) tgccctgaccagatttaagtttttgtaactcctgattgtcatttcctggatCCCATATGTTTCTATggg < 1:614194‑M1/18‑1 (MQ=255) gCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGAt < 1:4040133/71‑1 (MQ=255) cTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCt < 1:4031754/63‑1 (MQ=255) tAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTccc < 1:753973/51‑1 (MQ=255) ccctgaccagatttaagtttttgtaactcctgattgtcatttcctggatCCCATATGTTTCTATGGGATc > 1:136114‑M1/50‑70 (MQ=255) cctgaccagatttaagtttttgtaactcctgattgtcatttcctggatc < 1:519076‑M1/1‑1 (MQ=255) aaTTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGt > 1:4687786/1‑56 (MQ=255) tttAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGttt < 1:1610082/56‑1 (MQ=255) tAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGaaa > 1:4001565/1‑71 (MQ=255) tAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGaa < 1:4738234/70‑1 (MQ=255) tAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGaa < 1:1032370/70‑1 (MQ=255) gCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAt < 1:806256/70‑1 (MQ=255) gCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAt > 1:913911/1‑70 (MQ=255) gCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAt < 1:1052115/70‑1 (MQ=255) aaaTCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGAc < 1:1092170/71‑1 (MQ=255) aaTCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGa < 1:4187430/57‑1 (MQ=255) aaTCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGa < 1:2583597/64‑1 (MQ=255) aTCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACaa < 1:1311177/71‑1 (MQ=255) taagtttttgtaactcctgattgtcatttcctggatCCCa < 1:2294067‑M1/4‑1 (MQ=255) aagtttttgtaactcctgattgtcatttcctggatCCCa < 1:2630498‑M1/4‑1 (MQ=255) aaTACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATc < 1:1071275/70‑1 (MQ=255) aTACACTTCAGGTGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAg < 1:2877989/71‑1 (MQ=255) acacTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACa > 1:4904341/1‑64 (MQ=255) acacTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAg > 1:5079339/1‑69 (MQ=255) tttgtaactcctgattgtcatttcctggatCCCATATGTTTCTATg < 1:2777859‑M1/16‑1 (MQ=255) cacTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAGTCAGGAg > 1:2070933/1‑71 (MQ=255) cacTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAg > 1:5167774/1‑71 (MQ=255) cTTCAGGGGGGTATTATTGTAGAGTTTCCACATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGtt < 1:3098630/71‑1 (MQ=255) ttCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTa > 1:1190841/1‑71 (MQ=255) cAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACa > 1:3311345/1‑58 (MQ=255) cAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAg > 1:4354/1‑63 (MQ=255) cAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTAc > 1:4664637/1‑70 (MQ=255) cAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTAc > 1:1882131/1‑70 (MQ=255) cAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTAc < 1:4244450/70‑1 (MQ=255) aGGGGGGTATTATTGTAGAGTTTCCACATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGtt < 1:1637881/67‑1 (MQ=255) ggggggTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGa < 1:3525147/63‑1 (MQ=255) ggggggTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACaaa < 1:2362870/71‑1 (MQ=255) gggggTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACaaaa < 1:4460848/71‑1 (MQ=255) tattatTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACaaa < 1:1776860/65‑1 (MQ=255) ttattGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaaa < 1:2601710/71‑1 (MQ=255) ttattGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaaa > 1:1379482/1‑71 (MQ=255) ttattGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaa < 1:4576403/70‑1 (MQ=255) attGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAAt < 1:2995272/70‑1 (MQ=255) ttGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATc > 1:4119495/1‑70 (MQ=255) gTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACa < 1:696283/43‑1 (MQ=255) gagTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 1:5008879/70‑1 (MQ=255) gagTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 1:1686218/70‑1 (MQ=255) gagTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCa < 1:3430020/71‑1 (MQ=255) tCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGa > 1:4063250/1‑42 (MQ=255) tCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc > 1:5061296/1‑70 (MQ=255) | AGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGC > AP009048/2764477‑2764614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |