| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3676814 | 74 (1.320) | 4 (0.080) | 3/88 | NT | 5.4% | intergenic (+145/‑54) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C |
| ? | AP009048 | = 3676823 | 76 (1.570) | intergenic (+154/‑45) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C | |||||
GCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3676743‑3676814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcatGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT < AP009048/3676823‑3676754 GCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGT > 1:3988149/1‑66 CGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCAT > 1:1004467/1‑71 CGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGT > 1:3037501/1‑49 GCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATGATCCGCAGATGCTAACGT < 1:3067579/71‑1 CTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGC < 1:4311221/49‑1 TTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGC < 1:5027143/48‑1 TTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATGATCCGCAGATGCTAAC > 1:1965618/1‑65 TTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTA > 1:1708813/1‑44 GCCACTCCCTGACTGACAATTACGTTAGCATGATCCGCAGATGCTAA > 1:4774087/1‑47 GCCACTCCCTGACTGACAATTACGTTAGAATGATCCGCAGATGCTAA > 1:3639873/1‑47 TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCG > 1:2554592/1‑70 AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGG < 1:756713/70‑1 GCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACA < 1:1407791/51‑1 CATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAA < 1:4506704/71‑1 CATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAA > 1:380784/1‑61 ATGTTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATAT < 1:4948171/52‑1 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT > 1:4144766/1‑71 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT > 1:335689/1‑71 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGG < 1:4642536/66‑1 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC > 1:1977058/1‑64 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATG > 1:4251131/1‑54 TGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACAT > 1:2911064/1‑49 TGATCCGCAGATGATAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC > 1:4536444/1‑64 GCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3676743‑3676814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcatGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT < AP009048/3676823‑3676754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |