| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3676814 | 74 (1.320) | 4 (0.080) | 3/88 | NT | 5.4% | intergenic (+145/‑54) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C |
| ? | AP009048 | = 3676823 | 76 (1.570) | intergenic (+154/‑45) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C | |||||
Only 100 of 124 total aligned reads displayed.
CGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCAAAAACAGCAGC > AP009048/3676744‑3676884 | cGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCAT > 1:1004467‑M1/1‑71 (MQ=255) gAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATc > 1:3417507/1‑71 (MQ=255) aaGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCt > 1:3365164/1‑71 (MQ=255) gCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGc > 1:352238/1‑71 (MQ=255) gCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGc < 1:3137540/71‑1 (MQ=255) gATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGAt > 1:4739789/1‑70 (MQ=255) aTTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa > 1:335689‑M2/1‑70 (MQ=255) aTTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa > 1:4144766‑M2/1‑70 (MQ=255) tttCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCatg < 1:4506704‑M2/71‑4 (MQ=255) ccGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCatgct < 1:756713‑M2/70‑6 (MQ=255) ccGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa < 1:4642536‑M2/66‑2 (MQ=255) cGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCatgcta > 1:2554592‑M2/1‑64 (MQ=255) gggCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa > 1:1977058‑M2/1‑63 (MQ=255) ggCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaaaa < 1:5174284/71‑1 (MQ=255) gCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATgatccgcagatgctaacgt < 1:3067579‑M1/71‑20 (MQ=255) gCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaaa < 1:4518004/69‑1 (MQ=255) tttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCatg > 1:380784‑M2/1‑58 (MQ=255) tttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAAt > 1:4117961/1‑68 (MQ=255) tttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgc > 1:4763265/1‑71 (MQ=255) ttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATgatccgcagatgctaac > 1:1965618‑M1/1‑48 (MQ=255) ttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCg < 1:2015581/53‑1 (MQ=255) ttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgc < 1:3012732/70‑1 (MQ=255) tGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgcc < 1:1302181/70‑1 (MQ=255) ccATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgccgc < 1:2957520/70‑1 (MQ=255) cATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa > 1:4251131‑M2/1‑53 (MQ=255) tatatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgcc < 1:4848015/65‑1 (MQ=255) tatatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTgc > 1:3986055/1‑70 (MQ=255) tatatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGa > 1:1550365/1‑71 (MQ=255) tatatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGa > 1:3188953/1‑71 (MQ=255) atatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGa > 1:3911834/1‑48 (MQ=255) atatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAAt > 1:1154265/1‑60 (MQ=255) atatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGAACat < 1:4948171‑M2/52‑3 (MQ=255) tatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGAt < 1:1924603/48‑1 (MQ=255) tatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGAc < 1:5181771/70‑1 (MQ=255) tatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGAc < 1:1735462/70‑1 (MQ=255) tGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCatgc < 1:1407791‑M2/51‑5 (MQ=255) gTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAat > 1:1850100/1‑70 (MQ=255) ccAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattatt < 1:880336/71‑1 (MQ=255) ccAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattatt < 1:4928734/71‑1 (MQ=255) cAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATGATGCTAAAATCGCCGCCTGACAat < 1:4673852/66‑1 (MQ=255) aGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCa > 1:2196391/1‑71 (MQ=255) aGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCa > 1:2387740/1‑71 (MQ=255) gCCACTCCCTGACTGACAATTACGTTAGCATgatccgcagatgctaa > 1:4774087‑M1/1‑31 (MQ=255) ccACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGa > 1:3288419/1‑59 (MQ=255) ccAATCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACt > 1:4255030/1‑71 (MQ=255) cACTCCCTGACTGACAATTACGTTAGCATCTGCgg > 1:2935291/1‑35 (MQ=255) cACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACt > 1:3038627/1‑70 (MQ=255) cACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTc < 1:132094/71‑1 (MQ=255) cACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGAAAATTATTCACTc < 1:2303923/71‑1 (MQ=255) cACTCCCTGACCGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACt > 1:3627587/1‑70 (MQ=255) aCTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTc > 1:362120/1‑66 (MQ=255) aCTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCa < 1:3656364/71‑1 (MQ=255) aCTCCCTGACTGACAATTACGTTAGCATCTCCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCa < 1:4585063/71‑1 (MQ=255) aCTCCCTGACTGACAATTACGTTAGCATCAGCGGATCATGCTAAAATCGCCGCCTGa > 1:68046/1‑57 (MQ=255) cccTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaaaa > 1:3117065/1‑43 (MQ=255) cccTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTc < 1:2363021/67‑1 (MQ=255) ctgactgaCAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCt < 1:2097645/50‑1 (MQ=255) ctgactgaCAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattatt < 1:1515301/60‑1 (MQ=255) ctgactgaCAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCa > 1:1146149/1‑71 (MQ=255) ctgactgaCAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCa > 1:1740762/1‑71 (MQ=255) tgactgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACaa < 1:212824/54‑1 (MQ=255) tgactgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc > 1:2324621/1‑71 (MQ=255) actgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGa > 1:2595593/1‑71 (MQ=255) tgacAATTACGTTAGCATCTGCGGATCATGCTAAAATcgc > 1:1585425/1‑40 (MQ=255) tgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAatta < 1:3051258/53‑1 (MQ=255) tgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAatt > 1:931814/1‑52 (MQ=255) tgacAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAatt > 1:1714857/1‑52 (MQ=255) acAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCTCCTGACAATTATTCACTCAAGGCACGATc < 1:1999904/69‑1 (MQ=255) acAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattat > 1:2197075/1‑52 (MQ=255) acAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCa < 1:3541350/70‑1 (MQ=255) acAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCa < 1:4283317/70‑1 (MQ=255) cAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCa > 1:2961573/1‑69 (MQ=255) aaTTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATgg > 1:4047704/1‑71 (MQ=255) ttACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTc < 1:3867307/54‑1 (MQ=255) ttACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTc < 1:2290330/54‑1 (MQ=255) ttACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGc > 1:2370330/1‑70 (MQ=255) aCGTTAGCATCTGCGGATCatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagc < 1:3067579‑M2/71‑53 (MQ=255) cGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCaaa < 1:2821836/70‑1 (MQ=255) ttAGCATCTGCGGATCattctaacgtaattgtcagtcagggagtggc > 1:3639873‑M2/1‑16 (MQ=255) ttAGCATCTGCGGATCatgctaacgtaattgtcagtcagggagtggc > 1:4774087‑M2/1‑16 (MQ=255) tAGCATgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagcccg > 1:2554592‑M1/1‑6 (MQ=255) tAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCaaaaa > 1:648153/1‑69 (MQ=255) gCATgatccgcagatgctaacgtaattgtcagtcagggagtggctggtaca < 1:1407791‑M1/51‑48 (MQ=255) cATgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagcccggaaa < 1:4506704‑M1/71‑69 (MQ=255) cATgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaa > 1:380784‑M1/1‑3 (MQ=255) cATCTGCGGATCATGCTAAAATCGCCGCCTGACAatta < 1:3108457/38‑1 (MQ=255) cATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCAAAAAcag > 1:775202/1‑69 (MQ=255) aTgttccgcagatgctaacgtaattgtcagtcagggagtggctggtacatat < 1:4948171‑M1/52‑51 (MQ=255) aTCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCAAAAAcagcag > 1:3988970/1‑71 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagcccggaaaat > 1:4144766‑M1/1‑1 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagcccggaaaat > 1:335689‑M1/1‑1 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagcccgg < 1:4642536‑M1/66‑66 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatggcaaaagccc > 1:1977058‑M1/1‑1 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacatatatg > 1:4251131‑M1/1‑1 (MQ=255) tgatccgcagatgctaacgtaattgtcagtcagggagtggctggtacat > 1:2911064‑M1/1‑1 (MQ=255) tgatccgcagatgataacgtaattgtcagtcagggagtggctggtacatatatggcaaaagccc > 1:4536444‑M1/1‑1 (MQ=255) tCTGCTGATCATGCTAAAATCGCCGCCTGACAatta < 1:2770672/36‑1 (MQ=255) tCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc < 1:188689/50‑1 (MQ=255) tCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATc < 1:4406053/54‑1 (MQ=255) tCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCAAAAAcagcag > 1:2780648/1‑70 (MQ=255) | CGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCATGGCAAAAACAGCAGC > AP009048/3676744‑3676884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |